Jatropha Genome Database

JcCB0063521.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0063521.20 - phase: 1 /TE/pseudo/partial
         (201 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29674.m000206 conserved hypothetical protein                           49   2e-06

>29674.m000206 conserved hypothetical protein
          Length = 496

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 124 GVLEDVLVQVNELIFPVDFCVLDTKDDKXXXXXXXXXXXXXXXTAGAKIDASNGTFNIKF 183
           G++EDVL++V++ IFPVDF V+D + +                T+ A ID S+G   ++ 
Sbjct: 328 GIIEDVLIKVDKFIFPVDFVVMDMEGES---TVPLILGRPFLATSRAVIDVSDGKLKLRV 384

Query: 184 DGEIIKFTVYHTMKYPCD 201
           D E I F +  +M+   D
Sbjct: 385 DDETITFDLATSMRQSLD 402