Jatropha Genome Database

JcCB0062531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0062531.10 - phase: 0 
         (124 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29680.m001665 conserved hypothetical protein                          122   4e-29
29680.m001666 conserved hypothetical protein                          102   4e-23

>29680.m001665 conserved hypothetical protein
          Length = 133

 Score =  122 bits (306), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/136 (53%), Positives = 87/136 (63%), Gaps = 15/136 (11%)

Query: 1   MGKLNKQYLQHXX-XXXXXXXXXXXXXXXITYISNPTMVRATNASEFRAIVQELTGKDSK 59
           MGKL+KQY Q                   ITYISNPT+VRATNASEFRAIVQELTGKDSK
Sbjct: 1   MGKLSKQYFQQGQLPKSQKHTKNKKKPVKITYISNPTLVRATNASEFRAIVQELTGKDSK 60

Query: 60  ILDSWDI-PCTTSILEEATQLVTDHRYETPSLKIDSE------SAYTS----MEDNLFWK 108
           +LD+WD  P TTS  E A+Q+     YE+PS KIDSE      S+YTS    ++D  FW+
Sbjct: 61  VLDTWDPDPYTTSHEEAASQVPN---YESPSSKIDSESVADAFSSYTSSSLELDDGSFWR 117

Query: 109 DFSDSFSEFQSHCIFV 124
           + S+SF EF S  +FV
Sbjct: 118 NISESFFEFNSPRVFV 133


>29680.m001666 conserved hypothetical protein
          Length = 136

 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/129 (51%), Positives = 78/129 (60%), Gaps = 16/129 (12%)

Query: 1   MGKL-NKQYLQHXXXXXXXXXXXXXXXXXITYISNPTMVRATNASEFRAIVQELTGKDSK 59
           MGKL NKQ  QH                 ITYIS+PTMVRA NASEFRAIVQELTGKDSK
Sbjct: 3   MGKLSNKQCFQHQQPKFLNPSKNRKKPIKITYISSPTMVRAANASEFRAIVQELTGKDSK 62

Query: 60  ILDSWDIPCTTSILEEATQLVTDHRYETPSLKIDSE------SAYTSME----DNLFWKD 109
           +LD+W+    +SI EEA Q V+++   TP  K DSE      S+YTS      +N  W D
Sbjct: 63  VLDNWE----SSINEEACQ-VSNNCEATPCPKTDSESMDDILSSYTSSSALEMNNDSWID 117

Query: 110 FSDSFSEFQ 118
           F +SF EFQ
Sbjct: 118 FPESFFEFQ 126