Jatropha Genome Database

JcCB0062371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0062371.10 + phase: 0 
         (250 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29912.m005290 DNA binding protein, putative                           371   e-103
29739.m003593 DNA binding protein, putative                           362   e-101
30063.m001414 ATP synthase alpha subunit mitochondrial, putative      310   4e-85
29701.m000581 phd/F-box containing protein, putative                  263   5e-71
28162.m000123 phd/F-box containing protein, putative                  261   2e-70

>29912.m005290 DNA binding protein, putative
          Length = 251

 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/251 (74%), Positives = 189/251 (75%), Gaps = 1/251 (0%)

Query: 1   MDGGAQYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWXX 60
           MDGG QYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQW  
Sbjct: 1   MDGGVQYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWEV 60

Query: 61  XXXXXXXXXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR 120
                           GINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR 120

Query: 121 KRLFTMINDLPTIFEVVTGSVKKQAKDXXXXXXXXXXXXXXXXX-XXXXXXXFSKGQPKX 179
           KRLFTMINDLPTIFEVVTG+ KKQAK+                         +SK QPK 
Sbjct: 121 KRLFTMINDLPTIFEVVTGTAKKQAKEKSSVSNHSSNKSKSSSKGRGSESGKYSKAQPKD 180

Query: 180 XXXXXXXXXXXXXXXTLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYK 239
                          TLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYK
Sbjct: 181 EDEGLDEEDEEEHGDTLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYK 240

Query: 240 CPSCSNKRARP 250
           CPSCSNKRARP
Sbjct: 241 CPSCSNKRARP 251


>29739.m003593 DNA binding protein, putative
          Length = 251

 Score =  362 bits (929), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/251 (71%), Positives = 184/251 (73%), Gaps = 1/251 (0%)

Query: 1   MDGGAQYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWXX 60
           MDGGA YNPRTVEEVFRDFKGRRAGMI+ALTTDVEEFYQQCDPEKENLCLYGFP+EQW  
Sbjct: 1   MDGGASYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQQCDPEKENLCLYGFPSEQWEV 60

Query: 61  XXXXXXXXXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR 120
                           GINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR 120

Query: 121 KRLFTMINDLPTIFEVVTGSVKKQAKDXXXXXXXXXXXXXXXXXXXXXXX-XFSKGQPKX 179
           KRLF MINDLPTIFEVVTG+ KKQ K+                         FSK     
Sbjct: 121 KRLFNMINDLPTIFEVVTGTAKKQVKEKSSVSNHSSNKAKSNSKRGSESQGKFSKVMQSK 180

Query: 180 XXXXXXXXXXXXXXXTLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYK 239
                          TLCGACGENYA+DEFWICCDICEKWFHGKCVKITPARAEHIKQYK
Sbjct: 181 DEDDEEEEEDEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYK 240

Query: 240 CPSCSNKRARP 250
           CPSCSNKRARP
Sbjct: 241 CPSCSNKRARP 251


>30063.m001414 ATP synthase alpha subunit mitochondrial, putative
          Length = 367

 Score =  310 bits (794), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 155/254 (61%), Positives = 170/254 (66%), Gaps = 6/254 (2%)

Query: 1   MDGGAQYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWXX 60
           M+G  Q  PRTVEEVF DFKGRR+G+IKALT+DVE+FYQQCDPEKENLCLYG PNE W  
Sbjct: 114 MEGIPQPIPRTVEEVFSDFKGRRSGLIKALTSDVEKFYQQCDPEKENLCLYGLPNETWEV 173

Query: 61  XXXXXXXXXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR 120
                           GINFARDGMQEKDWLSLVAVHSD+WLLAVAFYFGARFGF K +R
Sbjct: 174 NLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNER 233

Query: 121 KRLFTMINDLPTIFEVVTGSVKKQAKDXXXXXXXXXXXXXXXXXXXXXXXXFSKG----- 175
           KRLF MIN+LPTIFEVV+G+V KQAKD                         +K      
Sbjct: 234 KRLFQMINELPTIFEVVSGNV-KQAKDQSATHNNSGKSKSTGKMQSRQPEPPTKAVKMTP 292

Query: 176 QPKXXXXXXXXXXXXXXXXTLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHI 235
             K                  CGACGE+Y  DEFWICCD+CE+WFHGKCVKITPA+AEHI
Sbjct: 293 PAKEEDESGEEEEEDDEQGATCGACGESYGTDEFWICCDVCERWFHGKCVKITPAKAEHI 352

Query: 236 KQYKCPSCSNKRAR 249
           KQYKCP CS KRAR
Sbjct: 353 KQYKCPGCSGKRAR 366


>29701.m000581 phd/F-box containing protein, putative
          Length = 239

 Score =  263 bits (673), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 134/242 (55%), Positives = 157/242 (64%), Gaps = 9/242 (3%)

Query: 8   NPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWXXXXXXXXX 67
           +PRTVEE+F+DF  RRAG+++ALT DV+EFY  CDPEKENLCLYG PNE W         
Sbjct: 6   SPRTVEEIFKDFSARRAGVVRALTHDVDEFYGLCDPEKENLCLYGHPNESWEVNLPAEEV 65

Query: 68  XXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFTMI 127
                    GINFARDGM  KDWLSLVAVHSD+WL++VAFYFGAR   ++ +RKRLF+MI
Sbjct: 66  PPELPEPALGINFARDGMDRKDWLSLVAVHSDSWLISVAFYFGAR--LNRNERKRLFSMI 123

Query: 128 NDLPTIFEVVTGSVKKQAKDXXXXXXXXXXXXXXXXXXXXXXXXFSKGQPKXXXXXXXXX 187
           ND+PT+FEVVT   +K  K+                          K  PK         
Sbjct: 124 NDMPTVFEVVTE--RKVVKEKPSVDSGSKSRGSIKRSNDGQV----KSNPK-LTEEVYED 176

Query: 188 XXXXXXXTLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKR 247
                  TLCG+CG +Y+ADEFWI CDICE+WFHGKCVKITPA+AE IKQYKCPSCS KR
Sbjct: 177 DEDEHNETLCGSCGGSYSADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSMKR 236

Query: 248 AR 249
            R
Sbjct: 237 NR 238


>28162.m000123 phd/F-box containing protein, putative
          Length = 240

 Score =  261 bits (667), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/242 (53%), Positives = 156/242 (64%), Gaps = 9/242 (3%)

Query: 8   NPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWXXXXXXXXX 67
           +PRTVEE+F+D+  RR+G+++ALT DV+EFY +CDPEKENLCLYG PNE W         
Sbjct: 7   SPRTVEEIFKDYNARRSGLVRALTYDVDEFYSRCDPEKENLCLYGHPNESWEVTLPAEEV 66

Query: 68  XXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFTMI 127
                    GINFARDGM  KDWLSLVAVHSD WLL+VAFYFGAR   ++ +RKRLF++I
Sbjct: 67  PPELPEPALGINFARDGMHRKDWLSLVAVHSDCWLLSVAFYFGAR--LNRNERKRLFSLI 124

Query: 128 NDLPTIFEVVTGSVKKQAKDXXXXXXXXXXXXXXXXXXXXXXXXFSKGQPKXXXXXXXXX 187
           NDLPT+F+VVTG  +K  KD                         +K             
Sbjct: 125 NDLPTLFDVVTG--RKPIKDKPSMDGGSKSRNGTKRSVDGQVRNNAK-----ILDENYAE 177

Query: 188 XXXXXXXTLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKR 247
                  TLCG+CG  Y+ADEFWI CD+CE+W+HGKCVKITPA+AE IKQYKCPSCS K+
Sbjct: 178 DEDEHGETLCGSCGGTYSADEFWIGCDVCERWYHGKCVKITPAKAEMIKQYKCPSCSTKK 237

Query: 248 AR 249
            R
Sbjct: 238 GR 239