Jatropha Genome Database

JcCB0061481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0061481.10 - phase: 2 /partial
         (117 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29646.m001074 DNA-directed RNA polymerase, putative                   169   2e-43

>29646.m001074 DNA-directed RNA polymerase, putative
          Length = 677

 Score =  169 bits (429), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/111 (80%), Positives = 98/111 (88%)

Query: 1   FELIRQGLRDLAVSQSTLPKADPRIAKLAADGADAPLEELQEIISEVATNIHGSYVLKSS 60
           F+LI QGLRDLAVSQSTLPKADPRIA  AA GADAP EELQEIIS+VATNIHG YVLKSS
Sbjct: 551 FQLICQGLRDLAVSQSTLPKADPRIAVAAASGADAPPEELQEIISQVATNIHGFYVLKSS 610

Query: 61  PDHPQYDVLRKVVIDLLLARGPNAKLKKSEVYEAAKLVLKRDINTTEYTKV 111
           P+HPQYD LRKV+IDLLLARGPNAKLKK+EV+EAA+L  KRD+   EY K+
Sbjct: 611 PEHPQYDELRKVIIDLLLARGPNAKLKKAEVFEAARLAFKRDVTNIEYNKL 661