Jatropha Genome Database

JcCB0060901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0060901.10 + phase: 0 /partial
         (290 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29933.m001418 Anaphase-promoting complex subunit, putative            502   e-143

>29933.m001418 Anaphase-promoting complex subunit, putative
          Length = 763

 Score =  502 bits (1292), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/300 (83%), Positives = 269/300 (89%), Gaps = 20/300 (6%)

Query: 8   VALSKDLRHMIVMCSGELNDNMVGSRENQMAGDVMHGSHGLVLDTSIFSKRKSELHQLAQ 67
           VALSKDL H+IVMCSGE ++NMV SRE+QM G   HGSH LVLDTSIF KRK+ELHQLAQ
Sbjct: 200 VALSKDLCHLIVMCSGEFSENMVESRESQMTG---HGSHSLVLDTSIFFKRKNELHQLAQ 256

Query: 68  QASNIEELTEVIRASLSVMSTQWSDAMRVFHEKFDSLSNLIVDH---------------- 111
           QASNIEELTEVIRASLSVMS QWSDAMR+FHEKF SLS LI DH                
Sbjct: 257 QASNIEELTEVIRASLSVMSKQWSDAMRMFHEKFGSLSTLINDHGNCWSAVPFTGFYCFH 316

Query: 112 -ALDSSPQEEFLSLLGGARTSPAVHQFLVNTLGEVGVKRVSKVVCGAGKELQRIVLDHIQ 170
            AL+SSPQEEFLSLLGGARTSPA+HQFLVN+LGE+GVKRVSKVVCGAGKELQRIVLDH+Q
Sbjct: 317 IALESSPQEEFLSLLGGARTSPAIHQFLVNSLGELGVKRVSKVVCGAGKELQRIVLDHMQ 376

Query: 171 PAAEIIAFRMGELRGLSRWRARYQGIGLDEMLINNATEKSGMMLVQIERFMRVLSSVEQQ 230
           PAAEI+AFRMGELRGLSRWRARYQGIGLDEMLI+NATEKSGM+LVQIERFMRVLSSVEQQ
Sbjct: 377 PAAEIVAFRMGELRGLSRWRARYQGIGLDEMLIDNATEKSGMILVQIERFMRVLSSVEQQ 436

Query: 231 FSNFFNWLLKCIKLLMQEPSDQLLPYNSELVVIFLKFLYDQDPVRQLLELSEVSHNIEVD 290
           FSNFF+WLLKCIKLLMQEPSDQLLPY+SELVVIFLKFLYDQDPVRQLLEL+EV H+IEVD
Sbjct: 437 FSNFFSWLLKCIKLLMQEPSDQLLPYSSELVVIFLKFLYDQDPVRQLLELTEVGHDIEVD 496