Jatropha Genome Database

JcCB0060791.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0060791.20 - phase: 2 /pseudo/partial
         (94 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29780.m001318 conserved hypothetical protein                          138   7e-34

>29780.m001318 conserved hypothetical protein
          Length = 190

 Score =  138 bits (347), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 61/84 (72%), Positives = 73/84 (86%)

Query: 7   IHMHHLMKDAEVPWHLIAIAIFFTLIKLPGPCYPYWGRIFVPHIANGVLWRTLWSAFLWF 66
           + +  L+KDAEVPWHLIAIAIFF+LIKLPGP YPYWGRIF+PH ANGVLWRT+WSAFLW+
Sbjct: 105 LELSPLLKDAEVPWHLIAIAIFFSLIKLPGPYYPYWGRIFIPHFANGVLWRTIWSAFLWY 164

Query: 67  RRPRKGSGAVLQQNSADSSNSETN 90
           R+PRK S ++L+Q+S   SNS TN
Sbjct: 165 RKPRKASQSMLKQDSVIGSNSGTN 188