Jatropha Genome Database

JcCB0060791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0060791.10 - phase: 0 /partial
         (222 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29780.m001319 RNA-binding protein Nova-1, putative                    315   1e-86
29794.m003342 nucleic acid binding protein, putative                  189   9e-49
29757.m000742 nucleic acid binding protein, putative                  172   1e-43
28872.m000243 Far upstream element-binding protein, putative           53   1e-07
27843.m000161 conserved hypothetical protein                           48   4e-06
28649.m000222 Poly(rC)-binding protein, putative                       48   4e-06

>29780.m001319 RNA-binding protein Nova-1, putative
          Length = 544

 Score =  315 bits (807), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 158/208 (75%), Positives = 170/208 (81%), Gaps = 1/208 (0%)

Query: 15  DGGKRKLDAFELAKQRAQEIASRIANDADQKRPRLVXXXXXXXXXXXXXX-XXXXXXXXX 73
           DGGKRKLD FELAKQRAQEIASRIANDAD KRPRLV                        
Sbjct: 13  DGGKRKLDVFELAKQRAQEIASRIANDADLKRPRLVSDSSPDPPSLYSNSIPAPPSYTVS 72

Query: 74  XXXXXXLYHGSQGISKKITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSL 133
                  YHGSQG SK+ITIP+GKVGVVIG+GGETIK IQ+QSGAKIQITKDQDADPHSL
Sbjct: 73  YASQQSQYHGSQGTSKRITIPSGKVGVVIGKGGETIKNIQLQSGAKIQITKDQDADPHSL 132

Query: 134 TRDVELMGSSDQISRAEELINDVIAETDAGGSASSAVHGLDTKQTGGEQFAMKVPNDKVG 193
           TRDVELMG+S+QISRAEELINDVIAETDAGGSASSAVHGL+TKQ G EQF+++VPNDKVG
Sbjct: 133 TRDVELMGTSEQISRAEELINDVIAETDAGGSASSAVHGLNTKQPGAEQFSIRVPNDKVG 192

Query: 194 LLIGKSGDTIKYMQNRSGARMQIIPLHL 221
           LLIGK G+TIKYMQ+RSGARMQIIPLHL
Sbjct: 193 LLIGKGGETIKYMQSRSGARMQIIPLHL 220



 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 49/69 (71%), Gaps = 3/69 (4%)

Query: 91  ITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQ--DADPHSLTRDVELMGSSDQISR 148
           I +PN KVG++IG+GGETIKY+Q +SGA++QI        DP +  R V + G ++QI  
Sbjct: 184 IRVPNDKVGLLIGKGGETIKYMQSRSGARMQIIPLHLPPGDP-TTERTVYINGLTEQIEA 242

Query: 149 AEELINDVI 157
           A+EL+NDV+
Sbjct: 243 AKELVNDVL 251


>29794.m003342 nucleic acid binding protein, putative
          Length = 306

 Score =  189 bits (480), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 108/217 (49%), Positives = 139/217 (64%), Gaps = 20/217 (9%)

Query: 21  LDAFELAKQRAQEIASRIANDA-----DQKRPRLVXXXXX-----------XXXXXXXXX 64
           +D  ++AKQ+AQEIA+R+ + A     D KRPR+                          
Sbjct: 60  VDEIQMAKQKAQEIAARLLSGAAGGGGDIKRPRVDNNGASGFDSNDNNKGFSSAPPNDLK 119

Query: 65  XXXXXXXXXXXXXXXLYHGSQGISKKITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITK 124
                           Y GS   SKKI IPNG+VGV+IG+GGETIKY+Q+QSGAKIQ+T+
Sbjct: 120 SLSNSAPSAIPVSYGTYLGSS--SKKIEIPNGRVGVIIGKGGETIKYLQIQSGAKIQVTR 177

Query: 125 DQDADPHSLTRDVELMGSSDQISRAEELINDVIAETDAGGSASSAVHGLDTKQTGGEQFA 184
           D DADP+S TR VELMG+ DQI++AE+LI++V+AE D GGS +  V    T Q G E F 
Sbjct: 178 DMDADPNSPTRMVELMGNPDQIAKAEQLISEVLAEADVGGSGT--VSRRFTGQGGSEHFV 235

Query: 185 MKVPNDKVGLLIGKSGDTIKYMQNRSGARMQIIPLHL 221
           MK+PN+KVGL+IGK GD+IK MQ R+GAR+Q+IPLHL
Sbjct: 236 MKIPNNKVGLVIGKGGDSIKNMQARTGARIQVIPLHL 272



 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 11/75 (14%)

Query: 91  ITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITK------DQDADPHSLTRDVELMGSSD 144
           + IPN KVG+VIG+GG++IK +Q ++GA+IQ+        D   D     R+V + G+S+
Sbjct: 236 MKIPNNKVGLVIGKGGDSIKNMQARTGARIQVIPLHLPPGDTSTD-----RNVHIEGTSE 290

Query: 145 QISRAEELINDVIAE 159
           QI  A++L+N+ I+E
Sbjct: 291 QIELAKQLVNEAISE 305


>29757.m000742 nucleic acid binding protein, putative
          Length = 798

 Score =  172 bits (435), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/139 (61%), Positives = 109/139 (78%), Gaps = 2/139 (1%)

Query: 84  SQGISKKITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLTRDVELMGSS 143
           +Q  S+K+ +PN KVGV+IG+GG+TI+Y+Q  SGAKIQIT+D DADPHS TR VEL+G+ 
Sbjct: 197 AQTTSRKMEVPNDKVGVLIGKGGDTIRYLQYNSGAKIQITRDMDADPHSTTRPVELIGTL 256

Query: 144 DQISRAEELINDVIAETDAGGSASSAVHGLDTKQTG--GEQFAMKVPNDKVGLLIGKSGD 201
             IS+AE+LIN VIAE DAGGS S    GL + QT   G+Q  M+VPN+KVGL+IG+ GD
Sbjct: 257 SSISKAEKLINAVIAEADAGGSPSLVARGLPSAQTAGVGDQIEMQVPNEKVGLIIGRGGD 316

Query: 202 TIKYMQNRSGARMQIIPLH 220
           TIK +Q +SGAR+Q+IP H
Sbjct: 317 TIKALQAKSGARIQLIPQH 335



 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 7/75 (9%)

Query: 90  KITIPNGKVGVVIGRGGETIKYIQVQSGAKIQI----TKDQDADPHSLTRDVELMGSSDQ 145
           ++ +PN KVG++IGRGG+TIK +Q +SGA+IQ+      + DA   S  R V + G   Q
Sbjct: 299 EMQVPNEKVGLIIGRGGDTIKALQAKSGARIQLIPQHPPEGDA---SKERTVRVTGDRKQ 355

Query: 146 ISRAEELINDVIAET 160
           I  A E+I DV+++ 
Sbjct: 356 IEIAREMIKDVMSQN 370


>28872.m000243 Far upstream element-binding protein, putative
          Length = 314

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 10/130 (7%)

Query: 90  KITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLTRDVELMGSSDQISRA 149
           +  + N   G VIG+GG TI   Q QSGA+IQ++++ +  P +  R + + G  D + + 
Sbjct: 39  RFLVSNAAAGSVIGKGGATITDFQSQSGARIQLSRNYEFFPGTSDRIILISGILDDVLKG 98

Query: 150 EELINDVIAETDAGGSASSAVHGLDTKQTGGE-QFAMKVPNDKVGLLIGKSGDTIKYMQN 208
            EL   V+A+        S +H  D        +  + VPN   G +IGK G  IK    
Sbjct: 99  VEL---VLAKL------LSELHTEDGDDVDPRTKVRLVVPNSSCGSIIGKGGSIIKSFIE 149

Query: 209 RSGARMQIIP 218
            S A ++I P
Sbjct: 150 ESQAGIKISP 159


>27843.m000161 conserved hypothetical protein
          Length = 295

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 3/69 (4%)

Query: 90  KITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLTRDVELMGSSDQISRA 149
           KI++     G +IG+GG   K I  Q+GAK+ I ++ + DP+   R++E  GS +QI +A
Sbjct: 172 KISVEASLAGAIIGKGGVNSKQICRQTGAKLSI-REHETDPN--LRNIEFEGSFEQIKQA 228

Query: 150 EELINDVIA 158
             +++++IA
Sbjct: 229 SAMVSELIA 237


>28649.m000222 Poly(rC)-binding protein, putative
          Length = 405

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 83/183 (45%), Gaps = 50/183 (27%)

Query: 83  GSQGISKKITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLTRDVELMGS 142
           G   ++ ++ +P+ ++G +IG+GG+ ++ I+ ++GA+I+I KD+   P +L+ D EL+  
Sbjct: 9   GGHQVTARLIVPSDQIGCIIGKGGQIVQNIRSETGAQIRILKDEHLPPCALSTD-ELVQI 67

Query: 143 SDQI------------------SRAEELI-----------NDVIAETDA----------- 162
           S ++                  SR + L+             +I  T A           
Sbjct: 68  SGEVAVVKKALYQIATRLHENPSRTQHLLFSAVPNVYPATGSLIGPTGAPIVGIAPLMST 127

Query: 163 -------GGSASSAVHGLDTKQTGGEQFAMKV--PNDKVGLLIGKSGDTIKYMQNRSGAR 213
                   G  S +++     +   ++F++++  P   +G +IGK G  I  ++  SGA 
Sbjct: 128 YGGYKGDAGDWSRSLYSAPRDELSSKEFSLRIVCPTGNIGGVIGKGGTIINQIRQESGAV 187

Query: 214 MQI 216
           +++
Sbjct: 188 IKV 190