Jatropha Genome Database

JcCB0060001.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0060001.20 - phase: 0 
         (230 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30068.m002670 conserved hypothetical protein                          322   1e-88
29780.m001393 conserved hypothetical protein                          164   2e-41
30170.m014145 conserved hypothetical protein                          152   1e-37
30131.m007143 conserved hypothetical protein                          147   5e-36

>30068.m002670 conserved hypothetical protein
          Length = 230

 Score =  322 bits (824), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 168/231 (72%), Positives = 185/231 (80%), Gaps = 2/231 (0%)

Query: 1   MGSYSNRNHMIPEASAGASVPHFAWFYP-NVYPTPKSSSFNSQGIPIDGQQGLPVTPIRS 59
           MG+YSNRNH+IPEAS GAS+PHFAWFYP + Y  PK++S +SQG  ID +  LPV PI S
Sbjct: 1   MGTYSNRNHLIPEASTGASLPHFAWFYPGSFYSAPKTNSIHSQGSQID-EPILPVPPICS 59

Query: 60  VAPSAEPAKNNNSGSKPAKTKKQKPSIKVSNQMXXXXXXXXXXXXXXXXXXXXTPEANRE 119
           +AP+AEPAKNNNSG+KPAK +KQKPS K SNQ+                     PEA RE
Sbjct: 60  IAPAAEPAKNNNSGAKPAKARKQKPSAKGSNQIPSKTFKLKQPRKTSKKKGQSMPEAKRE 119

Query: 120 KRNLDVDIDIRNFDFSGVPSPFCSCTGMHRVCYKWGAGGWQSSCCTTNISEYPLPMSSTR 179
           KRN++VDI   NFD SGVPSPFCSCTGM RVCYKWGAGGWQSSCCTTNISEYPLPMS+ R
Sbjct: 120 KRNINVDIGRMNFDLSGVPSPFCSCTGMPRVCYKWGAGGWQSSCCTTNISEYPLPMSAAR 179

Query: 180 AGARMAGRKMSNGAYLKLLLRLAAEGYDLSHPVDLKNHWARHGTNKFVTIK 230
            GARMAGRKMSNGAYLKLLL+LAAEGYDLSHPVDLK HWARHGTNKFVTIK
Sbjct: 180 PGARMAGRKMSNGAYLKLLLKLAAEGYDLSHPVDLKEHWARHGTNKFVTIK 230


>29780.m001393 conserved hypothetical protein
          Length = 283

 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 92/111 (82%)

Query: 120 KRNLDVDIDIRNFDFSGVPSPFCSCTGMHRVCYKWGAGGWQSSCCTTNISEYPLPMSSTR 179
           K+++DV I+  + D SG+P P CSCTG  + CY+WG GGWQS+CCTTN+S YPLPMS+ R
Sbjct: 173 KKSMDVVINGIDMDISGIPIPVCSCTGSPQQCYRWGCGGWQSACCTTNVSVYPLPMSTKR 232

Query: 180 AGARMAGRKMSNGAYLKLLLRLAAEGYDLSHPVDLKNHWARHGTNKFVTIK 230
            GAR+AGRKMS GA+ K+L +LAAEGY+ ++P+DL+ HWA+HGTNKFVTI+
Sbjct: 233 RGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWAKHGTNKFVTIR 283


>30170.m014145 conserved hypothetical protein
          Length = 339

 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 67/107 (62%), Positives = 82/107 (76%)

Query: 124 DVDIDIRNFDFSGVPSPFCSCTGMHRVCYKWGAGGWQSSCCTTNISEYPLPMSSTRAGAR 183
           D+ ++   FD S +P+P CSCTG+ R CYKWG GGWQSSCCTT +S +PLP    +  AR
Sbjct: 233 DLGLNQIAFDESTMPAPVCSCTGVFRQCYKWGNGGWQSSCCTTTLSMHPLPAVPNKRHAR 292

Query: 184 MAGRKMSNGAYLKLLLRLAAEGYDLSHPVDLKNHWARHGTNKFVTIK 230
           + GRKMS  A+ KLL RLAAEGYDLS PVDLK HWA+HGTN+++TIK
Sbjct: 293 VGGRKMSGSAFSKLLSRLAAEGYDLSSPVDLKEHWAKHGTNRYITIK 339


>30131.m007143 conserved hypothetical protein
          Length = 314

 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 63/104 (60%), Positives = 80/104 (76%)

Query: 127 IDIRNFDFSGVPSPFCSCTGMHRVCYKWGAGGWQSSCCTTNISEYPLPMSSTRAGARMAG 186
           +++ NFD S +P P CSCTG+   CYKWG GGWQSSCCTT +S YPLP    +  AR+ G
Sbjct: 211 LNLVNFDDSTMPVPVCSCTGVPHQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGG 270

Query: 187 RKMSNGAYLKLLLRLAAEGYDLSHPVDLKNHWARHGTNKFVTIK 230
           RKMS   + KLL RLA+EG+DLS P+DLK++WARHGTN+++TIK
Sbjct: 271 RKMSGSVFTKLLSRLASEGHDLSLPLDLKDYWARHGTNRYITIK 314