Jatropha Genome Database

JcCB0059761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0059761.10 - phase: 0 
         (411 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29851.m002388 expressed protein, putative                             714   0.0  

>29851.m002388 expressed protein, putative
          Length = 434

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/429 (81%), Positives = 376/429 (87%), Gaps = 20/429 (4%)

Query: 1   MSTTQGTHSLAFRVMRLCKPSFHVDAPLRVDPADLIVGEDIFDDPIAASRLPPLIDGQVS 60
           MSTT GTHSLAFRVMRLC+PSFHVDA L VDP+DLIVGEDIFDDP+AASRLPPLID  ++
Sbjct: 1   MSTTPGTHSLAFRVMRLCRPSFHVDAQLLVDPSDLIVGEDIFDDPVAASRLPPLIDSHIT 60

Query: 61  NLTDTSDLTYRTRFLLQHPSDSFGLTGLLVLPQAFGAIYLGETFCSYISINNSSNFEVRD 120
            LTDTSDL+YRTRFL QHPSDSFGLTGLLVLPQAFGAIYLGETFCSYISINNSSNFEVRD
Sbjct: 61  KLTDTSDLSYRTRFLHQHPSDSFGLTGLLVLPQAFGAIYLGETFCSYISINNSSNFEVRD 120

Query: 121 VIIKAEIQTERQRILLLDTSKTPVETIRAGGRYDFIVEHDVKELGAHTLVCTALYNDGDG 180
           VIIKAEIQTERQRILLLDTSK PVE+IRAGGRYDFIVEHDVKELGAHTLVCTALY+DGDG
Sbjct: 121 VIIKAEIQTERQRILLLDTSKNPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGDG 180

Query: 181 ERKYLPQFFKFIVANPLSVRT-----KETTYLEACIENHTKTSLYMDQVEFEPAQYWNAQ 235
           ERKYLPQFFKFIVANPLSVRT     KETTYLEACIENHTKT+LYMDQVEFEPAQ+W+A+
Sbjct: 181 ERKYLPQFFKFIVANPLSVRTKVRVVKETTYLEACIENHTKTNLYMDQVEFEPAQHWSAK 240

Query: 236 ILKADDNQSEKDSHTRETFKTPILIRSGGGIRNYLYQLRFSSNGSAQSNVLGKLQITWRT 295
           I+K D+ QSEKDS TRE FK P+LIRSGGGI NYLYQLR S++G+AQSNVLGKLQITWRT
Sbjct: 241 IIKDDEKQSEKDSLTREIFKPPVLIRSGGGIHNYLYQLRLSAHGAAQSNVLGKLQITWRT 300

Query: 296 NLGEPGRLQTQQILGNPITQKXXXXXXXXXXXXINLDKPFSVHLKLKNHTERELGPFEVW 355
           NLGEPGRLQTQQILG PIT+K            INLDKPFSVHLKL NHT++ELGPFEVW
Sbjct: 301 NLGEPGRLQTQQILGTPITRKEIELCIAKVPAVINLDKPFSVHLKLTNHTDKELGPFEVW 360

Query: 356 LSQNDSLDEKAVMINGLQS---------------LNLIAIKLGVQKITGITVFDKKEKKT 400
           LSQ+ S++EKAV INGLQ+               LNLIA KLGVQ+ITGITVFDK EKKT
Sbjct: 361 LSQDGSVEEKAVTINGLQTMELSQLEAFGTTDFHLNLIATKLGVQRITGITVFDKSEKKT 420

Query: 401 YDPLPDLEV 409
           YDPLPDLE+
Sbjct: 421 YDPLPDLEI 429