Jatropha Genome Database

JcCB0059061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0059061.10 + phase: 0 /partial
         (246 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30008.m000792 hypothetical protein                                    108   3e-24
30008.m000793 ATP binding protein, putative                            69   3e-12

>30008.m000792 hypothetical protein
          Length = 89

 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/56 (89%), Positives = 54/56 (96%)

Query: 172 TDDLEGRVHAHRSKEGMYNASFLYFIVKGKSIACQLETLLINQLPRKGFQLSNIAD 227
           TDDLEGRV AHRSKEGM+NASFLYFIV+GKSIACQLETLLINQLP KGFQL+N+AD
Sbjct: 5   TDDLEGRVRAHRSKEGMHNASFLYFIVQGKSIACQLETLLINQLPCKGFQLTNMAD 60


>30008.m000793 ATP binding protein, putative
          Length = 937

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/36 (83%), Positives = 33/36 (91%)

Query: 1   MGTEYVNGQTKPTWRLIDGICKESLAFETAKKEGIP 36
           MGTEYV+GQTKPTWRL DGIC+ESLAFETAK+E  P
Sbjct: 902 MGTEYVDGQTKPTWRLRDGICRESLAFETAKRERDP 937