Jatropha Genome Database

JcCB0058551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0058551.10 - phase: 0 
         (131 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29883.m002037 conserved hypothetical protein                          160   1e-40
29822.m003365 conserved hypothetical protein                          115   5e-27
27894.m000790 conserved hypothetical protein                           65   9e-12
29883.m002038 conserved hypothetical protein                           46   4e-06

>29883.m002037 conserved hypothetical protein
          Length = 500

 Score =  160 bits (405), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/87 (89%), Positives = 82/87 (94%)

Query: 32  AKIVSGYFSNAVSAFMKWLWSLKATTKTAITGRPTMKFESGYTVETVFDGSKLGIEPYSV 91
           AKIVSG+FSNA+S FMKWLWSLKAT+KTAI+GRP MKFE GY VETVFDGSKLGIEPYSV
Sbjct: 37  AKIVSGFFSNALSVFMKWLWSLKATSKTAISGRPMMKFEGGYNVETVFDGSKLGIEPYSV 96

Query: 92  EVLPGGELLILDSANSNIYRISSSLSL 118
           EVLP GELLILDSANSNIYRISSSLSL
Sbjct: 97  EVLPNGELLILDSANSNIYRISSSLSL 123


>29822.m003365 conserved hypothetical protein
          Length = 494

 Score =  115 bits (288), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 75/94 (79%)

Query: 24  SAPSTASPAKIVSGYFSNAVSAFMKWLWSLKATTKTAITGRPTMKFESGYTVETVFDGSK 83
           S+ S   P KIVSG  SN VSA +KWLWSLK+ TKTA + R  MKFE GYTVETVFDGSK
Sbjct: 20  SSVSATPPVKIVSGVVSNVVSALVKWLWSLKSNTKTAASSRSMMKFEGGYTVETVFDGSK 79

Query: 84  LGIEPYSVEVLPGGELLILDSANSNIYRISSSLS 117
           LGIEP++V+V P GELL+LDS NSNIY+IS+ LS
Sbjct: 80  LGIEPHTVDVSPSGELLVLDSENSNIYKISTPLS 113


>27894.m000790 conserved hypothetical protein
          Length = 484

 Score = 65.1 bits (157), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 6/89 (6%)

Query: 29  ASPAKIVSGYFSNAVSAFMKWLWSLKATTKTAITGRPTMKFESGYTVETVFDGSKLGIEP 88
           A+PA  +  +FS    +F+KW  + ++++KT  +    ++FE GY VETV +G+++G+ P
Sbjct: 28  AAPAGPLIKHFS----SFLKW--TARSSSKTPQSDGNVLQFEDGYLVETVVEGNEIGVVP 81

Query: 89  YSVEVLPGGELLILDSANSNIYRISSSLS 117
           Y + V   GEL  +D  NSNI +I+  LS
Sbjct: 82  YKIRVSEDGELYAVDEVNSNIVKITPPLS 110


>29883.m002038 conserved hypothetical protein
          Length = 408

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 69  FESGYTVETVFDGSKLGIEPYSVEVLP-GGELLILDSANSNIYRISSSLS 117
            E GYTV T+ DG KL I P++V   P   +L++LDS++S IY IS  +S
Sbjct: 32  LEDGYTVTTIIDGHKLEINPHAVLSRPQSSDLILLDSSHSTIYTISFPIS 81