Jatropha Genome Database

JcCB0058191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0058191.10 + phase: 0 /partial
         (126 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29904.m002965 conserved hypothetical protein                          212   4e-56

>29904.m002965 conserved hypothetical protein
          Length = 386

 Score =  212 bits (539), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 110/126 (87%), Gaps = 1/126 (0%)

Query: 1   EGANGAAVTSVTEISEKQHKVVKEEGATEVEVSQHRVFLLGENRWEEPSRLIGRDKHVHV 60
           E ANGAAV S+TEISE Q K+VK+ G TEV+ SQ RVFLLGENRWEEPSRL+ +DK V V
Sbjct: 262 ESANGAAVASITEISETQQKIVKD-GVTEVKGSQQRVFLLGENRWEEPSRLVSKDKQVGV 320

Query: 61  SKTKETTSKCLSCRGEGRLLCTECDGTGEPNIEPQFLEWVDEGTKCPYCEGLGYTICDVC 120
           SK K++ +KCLSCRGEGRLLCTECDGTGEPNIEPQFLEWV EG KCPYCEGLGYT CDVC
Sbjct: 321 SKPKDSMTKCLSCRGEGRLLCTECDGTGEPNIEPQFLEWVGEGMKCPYCEGLGYTTCDVC 380

Query: 121 EGKTMI 126
           EGKT+I
Sbjct: 381 EGKTLI 386