Jatropha Genome Database

JcCB0057531.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0057531.20 - phase: 1 /pseudo/partial
         (138 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30074.m001366 amino acid transporter, putative                         56   5e-09

>30074.m001366 amino acid transporter, putative
          Length = 461

 Score = 56.2 bits (134), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 29/41 (70%)

Query: 68  LCNYTSDWSLPVYFPLNMYKVQTNIKRGSCRWMCFQAMSLV 108
           L    S W L VYFPL+MY  Q NIKRGS RW+ FQA+SLV
Sbjct: 391 LLGAVSFWPLTVYFPLSMYMKQANIKRGSSRWVSFQALSLV 431