Jatropha Genome Database

JcCB0057251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0057251.10 - phase: 0 
         (390 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29794.m003448 lupus la ribonucleoprotein, putative                    451   e-127
30146.m003577 lupus la ribonucleoprotein, putative                    229   1e-60
30042.m000490 lupus la ribonucleoprotein, putative                     54   1e-07

>29794.m003448 lupus la ribonucleoprotein, putative
          Length = 494

 Score =  451 bits (1161), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 255/406 (62%), Positives = 300/406 (73%), Gaps = 50/406 (12%)

Query: 1   MAMPSLDEGTAKEVLRQVEFYSATAICRETNFMKNTINSSEDGSILTLEYDCVKTVVSLA 60
           MA  SLDEGTAKEVLRQVEFY + +     NFM+N IN SEDG            +VSL+
Sbjct: 1   MATASLDEGTAKEVLRQVEFYFSDSNLPRDNFMRNNINESEDG------------MVSLS 48

Query: 61  LICSFKKMKGYLKLNDVKPEEIPEDTLKAVAETLRKSTSLKVSEDGKKVGRIAALLKPDE 120
           LICSFKKMKGYLKL DVKPE++PE T++AVA+TLRKSTSLK+SEDGKKVGRIAALLKP+E
Sbjct: 49  LICSFKKMKGYLKLQDVKPEDVPEHTVQAVADTLRKSTSLKISEDGKKVGRIAALLKPEE 108

Query: 121 AIEQLDGRTVAASPLGYDVKREDVESFFGKYAKVTSVRLPRHVADKRVFCGTALIEFSTE 180
           AIEQLD RT+AASPL YD K EDV+SFFG+YAKV+SVR+PRHVADKRVFCG+ALIEFS E
Sbjct: 109 AIEQLDIRTIAASPLQYDAKMEDVQSFFGQYAKVSSVRMPRHVADKRVFCGSALIEFSNE 168

Query: 181 EDTENILKQSLVFDGVQLELKPKKEFDADRAELEEEFK-NRPLTGXXXXXXXXAEAAYPK 239
           EDTEN+LKQSLVF GVQLELKPKKEFD++R + EEEFK +RP +G        AEA YPK
Sbjct: 169 EDTENVLKQSLVFKGVQLELKPKKEFDSERIKQEEEFKSSRPFSG--SNNKNNAEATYPK 226

Query: 240 GLIVAFTLKGLSAGGSVGHD--QEPVNVEADVNKEDGLP-SVENADQENKEV-------- 288
           GL+VAFTLKG+SAGGSV  D  QEPV+V+A+ +K DG P S+ENA +ENKE         
Sbjct: 227 GLVVAFTLKGVSAGGSVEQDGGQEPVSVDANASKADGEPKSLENASEENKEKLSENISAD 286

Query: 289 ---------------------SENVSGDKENDEMNIEG-NEEEADKEIGSESKERQLEEG 326
                                SENVS DKEN EMNIE   EE+ D E GSESK  + E  
Sbjct: 287 KENDEMNIEEEKEEKIDEENGSENVSADKENHEMNIEEVKEEKIDGENGSESKGTETE-- 344

Query: 327 EKSSEDSAGKDKEQKERPKADAFRDDKNVVLREDIKGVLGKFGTIK 372
            KSSED   K+K+++E  KAD++RD+ NVV+RED+K +  KFGT+K
Sbjct: 345 GKSSEDPIAKEKKKEEHVKADSYRDNMNVVMREDLKAIFEKFGTVK 390


>30146.m003577 lupus la ribonucleoprotein, putative
          Length = 476

 Score =  229 bits (585), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 146/382 (38%), Positives = 216/382 (56%), Gaps = 27/382 (7%)

Query: 3   MPSLDEGTAKEVLRQVEFYSATAICRETNFMKNTINSSEDGSILTLEYDCVKTVVSLALI 62
           M +LDE TA ++L QVEFY + +     +F+   ++ S+DG            +VSLAL+
Sbjct: 1   MANLDEETASKILNQVEFYFSDSNLPRDDFLMKKVSQSKDG------------MVSLALV 48

Query: 63  CSFKKMKGYLKLNDVKPEEIPEDTLKAVAETLRKSTSLKVSEDGKKVGRIAALLKPDEAI 122
           CSF +++ +L L   K +++P + LK+VA+ LRKS+ L+VS DG+KVGR+  L K +E I
Sbjct: 49  CSFSRIRAFLGLGRTKQDDLPHELLKSVAKILRKSSFLRVSNDGRKVGRVKKLSKIEEVI 108

Query: 123 EQLDGRTVAASPLGYDVKREDVESFFGKYAKVTSVRLPRHVADKRVFCGTALIEFSTEED 182
           EQ+D RT+AASP  YD+  EDVESFF K+ KV SVRLPRH+A+ RVFCGTALIEFST+ D
Sbjct: 109 EQVDVRTIAASPFQYDITMEDVESFFAKFGKVNSVRLPRHMANNRVFCGTALIEFSTDGD 168

Query: 183 TENILKQSLVFDGVQLELKPKKEFDADRAELEEEFKNRPLTGXXXXXXXXAEAAYPKGLI 242
            E+ILKQSLV+ G  +EL              +      L+          + +Y KGLI
Sbjct: 169 AEHILKQSLVYAGANIELXHALACLGSECFKFQSLLTSCLSIALADRIPLPDDSYTKGLI 228

Query: 243 VAFTLKGLSAGGSVGHDQEPVNVEADVNKEDGLPSVENADQENKEVSENVSGD-----KE 297
            AF+LK  S G  V   +   ++E   N +      +N +Q + + +EN S D     K+
Sbjct: 229 FAFSLKRRSTGKPV---KNRSSIETITNSDGACKEEKNMNQGDCKETENTSEDIVEALKK 285

Query: 298 NDE----MNIEGNEEEADKEI-GSESKERQLEEGEKSSEDSAGKDKEQKER--PKADAFR 350
           N E     NIE + +   +EI  ++  +  +      S +S   +K +K     K +   
Sbjct: 286 NPENEKCKNIEEDGQIIFEEIVDTDQTQVTICHDRDQSSESVCHEKNEKATGGDKYNIVH 345

Query: 351 DDKNVVLREDIKGVLGKFGTIK 372
           ++K+V+L ED+  V  +FG +K
Sbjct: 346 EEKDVLLFEDLNDVFQRFGAVK 367


>30042.m000490 lupus la ribonucleoprotein, putative
          Length = 524

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 26/147 (17%)

Query: 12  KEVLRQVEFYSATAICRETNFMKNTINSSEDGSILTLEYDCVKTVVSLALICSFKKMKGY 71
           +++L QVE+Y +      T+ +   IN   DG             V ++++ SFKK+K  
Sbjct: 204 QKLLNQVEYYFSDLNLATTDHLMRFINKDPDG------------YVPISVVASFKKVKAA 251

Query: 72  LKLNDVKPEEIPEDTLKAVAETLRKSTSLKVSEDGKKVGRIAALLKPDEAIEQLDGRTVA 131
           +  N              +A  LR S  L VSEDGK+V R   L + D  +E+L  R V 
Sbjct: 252 INSNS------------HLASILRNSAKLVVSEDGKRVRRQNPLTELD--VEELQSRIVV 297

Query: 132 ASPLGYDVKREDVESFFGKYAKVTSVR 158
           A  L  D   +++   F     V ++R
Sbjct: 298 AENLPEDHCHQNLMKIFSAVGSVKTIR 324