Jatropha Genome Database

JcCB0057111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0057111.10 + phase: 0 /TE/pseudo/partial
         (174 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29724.m000868 hypothetical protein                                     69   2e-12

>29724.m000868 hypothetical protein
          Length = 311

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 8/90 (8%)

Query: 80  DVLLIRCPCGRGKCRIFTSHTQANPERKFYTCPVDKSSGSCGFFKWCDELS--------I 131
           D+    CPCG G C + T++T+ N  RKFY CP  + +G CGFF+WCD  S         
Sbjct: 102 DLDEKSCPCGLGNCVVLTANTERNQGRKFYRCPFRQENGGCGFFEWCDGASNSKANRIYA 161

Query: 132 TPPICPCGAGFCSLNRDSTSPYEEKWYFAC 161
           +   CPCGAGFC +    T     + ++ C
Sbjct: 162 SDVPCPCGAGFCLILTAKTGKNIGQQFYRC 191



 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 84  IRCPCGRGKCRIFTSHTQANPERKFYTCPVDKSSGSCGFFKWCDELSITPPICPCGAGFC 143
           + CPCG G C I T+ T  N  ++FY CP ++ S SC FFKWC++  I     P      
Sbjct: 164 VPCPCGAGFCLILTAKTGKNIGQQFYRCPANQGS-SCSFFKWCNDTVIAAGAQPASV--- 219

Query: 144 SLNRDSTSPYEEK 156
            LN  ST+   +K
Sbjct: 220 -LNVSSTNDLSKK 231