Jatropha Genome Database

JcCB0056061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0056061.10 - phase: 0 
         (71 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014385 rac gtpase, putative                                     71   9e-14
29602.m000209 rac gtpase, putative                                     71   9e-14
28962.m000460 rac gtpase, putative                                     70   2e-13
29646.m001113 rac gtpase, putative                                     68   7e-13
29900.m001556 rac gtpase, putative                                     68   7e-13
29912.m005491 rac gtpase, putative                                     65   9e-12
30147.m013989 rac gtpase, putative                                     64   2e-11
29709.m001184 rac gtpase, putative                                     62   6e-11

>30170.m014385 rac gtpase, putative
          Length = 197

 Score = 71.2 bits (173), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 33/33 (100%), Positives = 33/33 (100%)

Query: 1  MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33
          MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT
Sbjct: 1  MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33


>29602.m000209 rac gtpase, putative
          Length = 198

 Score = 71.2 bits (173), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 33/33 (100%), Positives = 33/33 (100%)

Query: 1  MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33
          MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT
Sbjct: 1  MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33


>28962.m000460 rac gtpase, putative
          Length = 197

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/33 (96%), Positives = 33/33 (100%)

Query: 1  MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33
          MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPT
Sbjct: 1  MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPT 33


>29646.m001113 rac gtpase, putative
          Length = 197

 Score = 68.2 bits (165), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/33 (93%), Positives = 32/33 (96%)

Query: 1  MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33
          MS +RFIKCVTVGDGAVGKTCMLISYTSNTFPT
Sbjct: 1  MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPT 33


>29900.m001556 rac gtpase, putative
          Length = 197

 Score = 68.2 bits (165), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/33 (93%), Positives = 32/33 (96%)

Query: 1  MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33
          MS +RFIKCVTVGDGAVGKTCMLISYTSNTFPT
Sbjct: 1  MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPT 33


>29912.m005491 rac gtpase, putative
          Length = 209

 Score = 64.7 bits (156), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/33 (90%), Positives = 31/33 (93%)

Query: 1  MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33
          MSAS+FIKCVTVGDGAVGKTCMLI YTSN FPT
Sbjct: 1  MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPT 33


>30147.m013989 rac gtpase, putative
          Length = 211

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/32 (93%), Positives = 30/32 (93%)

Query: 2  SASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33
          SASRFIKCVTVGDGAVGKTCMLI YTSN FPT
Sbjct: 4  SASRFIKCVTVGDGAVGKTCMLICYTSNKFPT 35


>29709.m001184 rac gtpase, putative
          Length = 202

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 31/32 (96%)

Query: 2  SASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33
          + ++FIKCVTVGDGAVGKTC+LISYTSNTFPT
Sbjct: 8  TTTKFIKCVTVGDGAVGKTCLLISYTSNTFPT 39