Jatropha Genome Database

JcCB0055221.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0055221.30 - phase: 0 
         (91 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m006957 conserved hypothetical protein                           56   4e-09

>30131.m006957 conserved hypothetical protein
          Length = 96

 Score = 55.8 bits (133), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 3/69 (4%)

Query: 6  LVMLLLICIGAEQVQGQ-KALAKCLSTCGESILKCALGCAPT--GMPQLAKCILKCGVAN 62
          +++LLL+   A   Q Q   + +CL+ CG+ I+ C + C  T  G+P+LA+CI  CG  N
Sbjct: 14 MLVLLLMWAWAGTAQAQVNDMGQCLTGCGQDIVTCTVRCVETSKGLPELAQCIEGCGATN 73

Query: 63 FSCMEKCVG 71
          FSCM KC G
Sbjct: 74 FSCMGKCTG 82