Jatropha Genome Database

JcCB0055221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0055221.20 + phase: 0 /pseudo
         (290 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m006956 hypothetical protein                                    175   2e-44

>30131.m006956 hypothetical protein
          Length = 193

 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/101 (83%), Positives = 91/101 (90%)

Query: 190 FSQRKAELVVPEDGKPSWTKRLLLDRNLLCSKIREEADELCRTIEENEHSARTASEMGDV 249
            SQRKAEL  P++GKPSWT+RLL D NLLCSKIREEADELCRT+EENEHS  TASEMGDV
Sbjct: 93  ISQRKAELAAPQEGKPSWTRRLLDDPNLLCSKIREEADELCRTLEENEHSIHTASEMGDV 152

Query: 250 LYHTMVLLALKDVKIEDVLDVLRRRFSQSGIEEKKSRGQQN 290
           LYH MVLLA KDVKIEDVLDVLR+RFSQSGI+EK+SR QQN
Sbjct: 153 LYHAMVLLAHKDVKIEDVLDVLRQRFSQSGIDEKRSRKQQN 193



 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 71/110 (64%), Gaps = 17/110 (15%)

Query: 1   MAASSLHCIQSLRFSSRSCAFFPHIGFRGDDDNKRK-NSRLILASVKKSDKDLSVESKVE 59
           MA SSL+ +Q L  SS++  FF      GD + K+  N  LILAS KKS      ESKVE
Sbjct: 1   MAISSLNSVQFLGCSSKNRNFFA----VGDYNAKKAINFPLILASAKKS------ESKVE 50

Query: 60  TLLDSVKWDDKGLAVAIAQNIDTGAILMQG----FVNRDALATTISSRKA 105
           TLLDSVKWD+KGLAVAIAQNIDTGA+  QG         +L +TIS RKA
Sbjct: 51  TLLDSVKWDEKGLAVAIAQNIDTGAV--QGKRLALTTLYSLESTISQRKA 98