Jatropha Genome Database

JcCB0053361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0053361.10 + phase: 2 /partial/short
         (39 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28152.m000896 conserved hypothetical protein                           49   3e-07

>28152.m000896 conserved hypothetical protein
          Length = 60

 Score = 49.3 bits (116), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 23/29 (79%)

Query: 2  REEGTASGWLHRAAITSHSWQWKDNESVL 30
          R EGTA GW HRAAITS SWQWKDN  VL
Sbjct: 26 RAEGTALGWFHRAAITSLSWQWKDNGPVL 54