Jatropha Genome Database

JcCB0052901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0052901.10 + phase: 0 /pseudo/partial
         (295 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011109 hydroxymethylglutaryl-CoA synthase, putative            464   e-131

>30190.m011109 hydroxymethylglutaryl-CoA synthase, putative
          Length = 464

 Score =  464 bits (1194), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 217/253 (85%), Positives = 230/253 (90%)

Query: 1   MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTVGLGQDCMAFCSEVEDVISMSLTA 60
           MAKNVGILA+DIYFPPTCVQQEALEAHDGASKGKYT+GLGQDCM FC+EVEDVISMSLTA
Sbjct: 1   MAKNVGILALDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCMGFCTEVEDVISMSLTA 60

Query: 61  VSSLLEKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDVEGVDSTNACYGG 120
           V+SLL+ YNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEK+GNTD+EGVDS+NACYGG
Sbjct: 61  VTSLLDNYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKHGNTDIEGVDSSNACYGG 120

Query: 121 TAALLNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARXXXXXXXXXXXXXXXXXXXFESK 180
           TAAL NCVNWVES+SWDGRYGLVVCTDSAVYAEGPAR                   FESK
Sbjct: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESK 180

Query: 181 FRGSHMSHTYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKNFCAKYEKFKGKQFSISD 240
           +RGSHMSH YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+FCAKYEKF+GKQFSISD
Sbjct: 181 YRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHFCAKYEKFEGKQFSISD 240

Query: 241 AEYFVFHSPYNKV 253
           AEYFVFHSPYNK+
Sbjct: 241 AEYFVFHSPYNKL 253