Jatropha Genome Database

JcCB0052881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0052881.10 + phase: 0 /pseudo/partial
         (283 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29820.m001006 breast cancer type 2 susceptibility protein brca2,...   411   e-115

>29820.m001006 breast cancer type 2 susceptibility protein brca2,
            putative
          Length = 1156

 Score =  411 bits (1057), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/258 (76%), Positives = 225/258 (87%)

Query: 15   ATKQLDMDKAIKKALQDAGIQEREVTPFLRVRVVGLTSYHGKAVAKEGLITIWSPTEKQR 74
            ATKQ+DM+K IK ALQ+AG++EREVTPF+RVRVVGLT+  GK + KEGLITIW+PTEKQ+
Sbjct: 851  ATKQMDMEKTIKGALQEAGLREREVTPFMRVRVVGLTNNQGKGILKEGLITIWNPTEKQK 910

Query: 75   NELVEGQAYAIAGLLPVNADSNTLYLQARGSTTKWEPLSPLAIKNFQPFFNPRVSVLMSN 134
             ELVEGQAYA+AGLLPVN+DSNTLYLQARGS TKW  LS LAI++FQPFF+PR SV +SN
Sbjct: 911  TELVEGQAYAVAGLLPVNSDSNTLYLQARGSATKWLSLSSLAIQHFQPFFSPRESVSLSN 970

Query: 135  LGEVPLSSEFDIAAYVVYVGEVYTTAQWKKQWVFVTDCSISALWSEELSNSLLAISFCSP 194
            LGEVPLSSEFD AAYVVYVGEVYTTAQWKKQWVFV D SIS L SEE+SNSLLAISFC+P
Sbjct: 971  LGEVPLSSEFDTAAYVVYVGEVYTTAQWKKQWVFVIDNSISTLKSEEISNSLLAISFCTP 1030

Query: 195  YIDDDSFTPINYNLEGSAVGFFNLIKKAKDQINHLWIAEATENSTYSFSFDSPICSHLKI 254
             I+D SF PIN NL G+ VGFFNLIKKA+DQ+NH+W AEATENSTYS +FDS  CSH++ 
Sbjct: 1031 CINDGSFAPINSNLAGTTVGFFNLIKKAEDQMNHVWTAEATENSTYSLNFDSSNCSHIRS 1090

Query: 255  AAASAQSWGKTSSLVHNL 272
            AAA+ QSW KTSSLV  L
Sbjct: 1091 AAATTQSWAKTSSLVFAL 1108