Jatropha Genome Database

JcCB0052451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0052451.10 + phase: 1 /partial/short
         (46 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29583.m000188 Iron-sulfur assembly protein IscA, chloroplast pre...    99   5e-22
28325.m000058 Iron-binding protein iscA, putative                      50   3e-07
29625.m000704 iron-sulfur cluster assembly protein, putative           46   4e-06
29839.m000442 iron-sulfur cluster assembly protein, putative           45   6e-06

>29583.m000188 Iron-sulfur assembly protein IscA, chloroplast
           precursor, putative
          Length = 178

 Score = 98.6 bits (244), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 45/46 (97%), Positives = 46/46 (100%)

Query: 1   CDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 46
           CDPKSLLF+FGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Sbjct: 133 CDPKSLLFVFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 178


>28325.m000058 Iron-binding protein iscA, putative
          Length = 116

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 26/43 (60%)

Query: 2   DPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAA 44
           D  S  +L G ++DY D L G  F  KNP AT TCGCG SF+ 
Sbjct: 74  DSMSYQYLVGAEIDYKDDLEGAQFVIKNPQATSTCGCGSSFSV 116


>29625.m000704 iron-sulfur cluster assembly protein, putative
          Length = 138

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 2   DPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 42
           DPK+L+ + G ++D+ D  +   F F NPN+   CGCG+SF
Sbjct: 83  DPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 123


>29839.m000442 iron-sulfur cluster assembly protein, putative
          Length = 132

 Score = 45.4 bits (106), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 2   DPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 42
           DPK+L+ + G ++D+ D  +   F F NPN+   CGCG+SF
Sbjct: 77  DPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESF 117