Jatropha Genome Database

JcCB0050881.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0050881.20 + phase: 0 /partial
         (152 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30003.m000328 actin, putative                                         320   1e-88
29613.m000365 actin, putative                                         320   1e-88
29836.m000559 actin, putative                                         318   9e-88
30206.m000761 actin, putative                                         318   9e-88
29739.m003732 actin, putative                                         227   2e-60
30131.m007032 Actin, putative                                         162   4e-41
29929.m004778 protein binding protein, putative                       121   1e-28
30174.m008703 protein binding protein, putative                       118   1e-27
29864.m001496 Actin, putative                                          75   9e-15
29927.m000609 conserved hypothetical protein                           60   3e-10

>30003.m000328 actin, putative
          Length = 309

 Score =  320 bits (821), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 150/152 (98%), Positives = 151/152 (99%)

Query: 1   MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152


>29613.m000365 actin, putative
          Length = 377

 Score =  320 bits (821), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 150/152 (98%), Positives = 151/152 (99%)

Query: 1   MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG
Sbjct: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152


>29836.m000559 actin, putative
          Length = 377

 Score =  318 bits (814), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 149/152 (98%), Positives = 150/152 (98%)

Query: 1   MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           MTQIMFETFN PAMYVAIQAVLSLYASGRTTG
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTG 152


>30206.m000761 actin, putative
          Length = 377

 Score =  318 bits (814), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 149/152 (98%), Positives = 150/152 (98%)

Query: 1   MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           MTQIMFETFN PAMYVAIQAVLSLYASGRTTG
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTG 152


>29739.m003732 actin, putative
          Length = 376

 Score =  227 bits (578), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 102/150 (68%), Positives = 122/150 (81%)

Query: 3   DNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D  +++P+VCD+G+G VKAGFAGDDAPR VF +++GRPR+   M+G+GQKD Y GDEA++
Sbjct: 2   DFLEVKPIVCDSGSGSVKAGFAGDDAPRVVFTNVIGRPRNRHAMIGIGQKDMYFGDEAEA 61

Query: 63  KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           +RGIL L  PI HGI+ +W+ ME IW HTF  ELRVA EEHPVLLTEAPLNPK NREKM 
Sbjct: 62  RRGILKLSNPIHHGIIRDWEAMEGIWEHTFDRELRVAIEEHPVLLTEAPLNPKINREKMV 121

Query: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           +IMFE F  PA Y+AIQAVLS YASGRTTG
Sbjct: 122 EIMFEAFEIPATYIAIQAVLSFYASGRTTG 151


>30131.m007032 Actin, putative
          Length = 387

 Score =  162 bits (411), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 76/152 (50%), Positives = 102/152 (67%), Gaps = 4/152 (2%)

Query: 3   DNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEA 60
           DN ++  +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   ++    KDA VG+  
Sbjct: 2   DNRNV--IVCDNGTGYVKCGFAGENFPTSVFPCVVGRPMLRYEESLMEEQLKDAVVGEAC 59

Query: 61  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
              R  L + YP+ +GIV NWDDM  +W H F+NEL++ P E  +LLT+ PLNP  NREK
Sbjct: 60  ADLRHQLDISYPVNNGIVQNWDDMGHVWDHAFFNELKIDPTECKILLTDPPLNPSKNREK 119

Query: 121 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           M + MFE +N   +++ IQAVL+LYA G  TG
Sbjct: 120 MVETMFEKYNFAGVFIQIQAVLTLYAQGLLTG 151


>29929.m004778 protein binding protein, putative
          Length = 427

 Score =  121 bits (304), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 91/161 (56%), Gaps = 19/161 (11%)

Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVG-------RPRHTGVMVGMGQKDA-------- 54
           +V DNGTG  K GFAG+  P  + P++V        + R T     + Q +A        
Sbjct: 9   VVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRTTSKANWLSQHNAGVMADLDF 68

Query: 55  YVGDEAQSKR---GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 111
           ++G+EA +K        L YPI+HG V+NWD ME+ W    +N LR  PE+H  LLTE+P
Sbjct: 69  FIGEEAITKSRSSNTYNLSYPIKHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESP 128

Query: 112 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 152
           L     RE   +IMFETFN P +Y+A+ +VL+L A+G TT 
Sbjct: 129 LTAPETREYTGEIMFETFNVPGLYIAVNSVLAL-AAGYTTS 168


>30174.m008703 protein binding protein, putative
          Length = 442

 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 96/174 (55%), Gaps = 23/174 (13%)

Query: 1   MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--------------- 45
           M   +++  +V D G+   KAG+AG+DAP+AVFPS+VG      +               
Sbjct: 1   MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGSIDQMELDDTTNNEKNPSADSK 60

Query: 46  -------MVGMGQKDAYVGDEAQS-KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR 97
                    G G++  YVG +A   +R  + +  PI+ G+V +WD ++ IW H F   L 
Sbjct: 61  NNNGKDSEKGKGKRKLYVGSQAVGFRRDHMEVLSPIKDGVVVDWDIVDNIWDHAFRECLL 120

Query: 98  VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 151
           + P+EHP+LL E   N +  RE+  ++MFE +N PA+++A  AVL+ +ASGR T
Sbjct: 121 IDPKEHPMLLAEPSFNSQQQRERTAELMFEKYNVPALFLAKNAVLTSFASGRPT 174


>29864.m001496 Actin, putative
          Length = 360

 Score = 75.5 bits (184), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 69/144 (47%), Gaps = 16/144 (11%)

Query: 11  VCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL 69
           V D G+ ++KAG A  D AP  + P+ + +    G       +D  V             
Sbjct: 5   VIDAGSKLLKAGTAVPDQAPPIIIPTQMKQMLEDGSSGDNSFEDVNVD------------ 52

Query: 70  KYPIEHGIVNNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFET 128
             P+  G + +WD ME +  +  Y  L      E  +L T+    PK+ RE++ Q+MFET
Sbjct: 53  --PVVRGFIRDWDAMEDLMQYVLYTGLEWEEGNEGQILFTDPLCTPKSVREQLVQLMFET 110

Query: 129 FNTPAMYVAIQAVLSLYASGRTTG 152
           FN    Y + QAVLSLYA GR +G
Sbjct: 111 FNVSGFYASEQAVLSLYAIGRISG 134


>29927.m000609 conserved hypothetical protein
          Length = 449

 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 13/144 (9%)

Query: 10  LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILT- 68
           +V DNG G +KAG  G+  P  + P+ V RP  +           Y+   + +    LT 
Sbjct: 25  IVLDNGGGYIKAGHGGERDPVTIIPNCVYRPLSS---------KKYLHPSSSTTTEDLTS 75

Query: 69  --LKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 126
             ++ PI+ G + N D    IW+H F + L V P    +LLTE      + +    +++F
Sbjct: 76  AVIRRPIDRGYLINPDLQRDIWNHVFTSLLHVTPSSSSLLLTEPLFTLPSIQRATDELVF 135

Query: 127 ETFNTPAMYVAIQ-AVLSLYASGR 149
           E F   ++++     ++ LY + R
Sbjct: 136 EDFGFNSLFITDSPKLVHLYEASR 159