Jatropha Genome Database

JcCB0050881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0050881.10 + phase: 0 /pseudo/partial
         (277 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30003.m000326 Synaptic glycoprotein SC2, putative                     444   e-125
27798.m000584 3-oxo-5-alpha-steroid 4-dehydrogenase, putative          59   3e-09

>30003.m000326 Synaptic glycoprotein SC2, putative
          Length = 310

 Score =  444 bits (1143), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/249 (86%), Positives = 223/249 (89%), Gaps = 2/249 (0%)

Query: 31  LNYKKSLKDYCDGNS--LTVVLKDLGPQVSYRTLFFWEYLGXXXXXXXXXXXXXXQYFGY 88
           LNYKKSLKDYCDGNS  +TVV KDLGPQVSYRTLFF+EYLG              +YFGY
Sbjct: 62  LNYKKSLKDYCDGNSDNITVVFKDLGPQVSYRTLFFFEYLGPLILYPVFYFFPVYKYFGY 121

Query: 89  KGERVIQPVQTYALLYWCFHYFKRIMETFFVHRFSHATSPLSNVFRNCAYYWTFGCYIAY 148
           K ERVI PVQTYA+ YWCFHYFKRIMETFFVHRFSHATSPLSNVFRNCAYYWTFG YIAY
Sbjct: 122 KEERVIHPVQTYAMYYWCFHYFKRIMETFFVHRFSHATSPLSNVFRNCAYYWTFGSYIAY 181

Query: 149 YVNHPLYTPVSDLQWKIGFGFGLICQVANFYCHILLKNLRSPDGGGGYQIPRGFLFDIVT 208
           YVNHPLYTPV DLQ KIGFGFGLICQ+ANFYCHILLKNLRSPDG GGYQIP GFLF+IVT
Sbjct: 182 YVNHPLYTPVGDLQMKIGFGFGLICQIANFYCHILLKNLRSPDGSGGYQIPHGFLFNIVT 241

Query: 209 CANYTTEIYQWLGFNIATQTVAGYIFLVVAAMIMTNWALAKHRRLKKLFDGKDGRPKYPR 268
           CANYTTEIYQWLGFNIATQTVAGYIFLVVAA IMTNWALAKHRRL+KLFDGKDGRPKYPR
Sbjct: 242 CANYTTEIYQWLGFNIATQTVAGYIFLVVAASIMTNWALAKHRRLRKLFDGKDGRPKYPR 301

Query: 269 RWVILPPFL 277
           RWVILPPFL
Sbjct: 302 RWVILPPFL 310


>27798.m000584 3-oxo-5-alpha-steroid 4-dehydrogenase, putative
          Length = 263

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 5/85 (5%)

Query: 193 GGGYQIPRGFLFDIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAAMIMTNWALAKHRR 252
           G GY++PRG LFD+V+C NY  EI +WLG+ + T +  G+ F +  +  +   A+A H+ 
Sbjct: 183 GDGYKVPRGGLFDLVSCPNYFGEIVEWLGWTLMTWSWVGFGFFLYTSANLVPRAVANHKW 242

Query: 253 LKKLFDGKDGRPKYPRRWVILPPFL 277
               F GKD    YPR    + PFL
Sbjct: 243 YLDKF-GKD----YPRGRKAVIPFL 262