Jatropha Genome Database

JcCB0050531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0050531.10 + phase: 0 /partial
         (356 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27798.m000585 α-carboxyl-tansferase (α-CT) subunit of ...   422   e-119
30174.m008999 acetyl-coenzyme A carboxylase carboxyl transferase...    65   6e-11

>27798.m000585 α-carboxyl-tansferase (α-CT) subunit of
           Het-ACCase
          Length = 766

 Score =  422 bits (1086), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/351 (65%), Positives = 266/351 (75%), Gaps = 6/351 (1%)

Query: 6   KEEEPVAGKTPXXXXXXXXXXXXQQIXXXXXXXXXXXXLALNEMIEKLKREIDLEFSEAV 65
           K++E VAGKTP            QQI            LALNEMIEKLK+E+DLEFSEAV
Sbjct: 422 KKKELVAGKTPVVELEGEVEKLKQQISKAKQSSSKPPELALNEMIEKLKKEVDLEFSEAV 481

Query: 66  KAMGFKDRFATLREEFLKANSQDQLMHPGLMDKIEKLKNEFTQGLSAAPNFPSLKYKLDM 125
           KA+GF+DRFA LREEFLKANSQDQLMHP LMDKIEKLK+EFT+ LSAAPN+ SLKYKLDM
Sbjct: 482 KALGFQDRFANLREEFLKANSQDQLMHPILMDKIEKLKDEFTKSLSAAPNYASLKYKLDM 541

Query: 126 LKEFSKAKNISEKNSKGLTLKQEINKKLKEVMDQPDMKEKMEALEAEVLRSGAYNEGELD 185
           LKEFSKAK++SEKNSK L LK+EIN KLKEV+D+PD+KEKMEAL+A++  S AYNEGELD
Sbjct: 542 LKEFSKAKSLSEKNSKALALKREINDKLKEVLDRPDIKEKMEALKAQIHMSEAYNEGELD 601

Query: 186 XXXXXXXXXXXXXXXXXLANVFKSLGLEVEIVKSKAKELGEQTPLLDFKAKVENLKEQTN 245
                            LAN+FKS+ L+V +V++KAKEL EQT   +FKAKVE+LKEQTN
Sbjct: 602 EETKESIVKMRKEMELELANIFKSMDLDVAVVRTKAKELSEQTTFPEFKAKVESLKEQTN 661

Query: 246 KKIEGLINSSDLKNMIELLKLEVAKAGNKPDVTSKNKIEALEHQIKQRLSSAINSTXXXX 305
           KKIE LINSSD+KNMI LLKLEVAKAG+KPDVT+KNKI ALE QIKQ+LS+AINST    
Sbjct: 662 KKIEDLINSSDIKNMINLLKLEVAKAGSKPDVTTKNKIVALEQQIKQKLSAAINSTELKQ 721

Query: 306 XXXXXXXXISEAAEFAAGLDGSLKNDDSREGVSKHDESRVEINLGANRTFA 356
                   +SEA      +DGSLKN+D  +  +KHDESRVEIN GANR+FA
Sbjct: 722 KFEELDLEVSEA------IDGSLKNNDPMDRGAKHDESRVEINFGANRSFA 766


>30174.m008999 acetyl-coenzyme A carboxylase carboxyl transferase
           alpha, putative
          Length = 722

 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 132/264 (50%), Gaps = 42/264 (15%)

Query: 47  NEMIEKLKREIDLEFSEAVKAMGFKDRFATLREEFLKANSQ--DQLMHPGLMDKIEKLKN 104
           +E IEKLK+++D E + A  +MG +++   ++ E  KA ++  +Q ++  L +K++K+  
Sbjct: 459 SEAIEKLKQDVDQEITNAFISMGLQEKLELVKLELSKAPNRPPNQPLNRNLKEKVDKIME 518

Query: 105 EFTQGLSAAPNFPSLKYKLDMLKEFSKAKNISEKNSKGLTLKQEINKKLKEVMDQPDMKE 164
           +F   LS    + +LK+KL  L    +   + +++ K   LK EIN+K+ E     ++K 
Sbjct: 519 DFKLNLSRPGAYLALKHKLQKLNAVHRLMELKDRSEK---LKAEINQKVPE-----EVKA 570

Query: 165 KMEAL--------EAEVLRSGAYNEGELDXXXXXXXXXXXXXXXXXLANVFKSLGLEVEI 216
           KM+ +        + +VL      E E                   L  V +S GL+V  
Sbjct: 571 KMKIIRDTEEKLSKGDVLNKDLVEEVE--------------RANKELLKVLESSGLQVIG 616

Query: 217 VKSKAKELGEQTPLLDFKAKVENLKEQTNKKIEGLINSSDLKNMIELLKLEVAKAGNKPD 276
           V  +       TP    + K+E++ +  +++IE +I+ + L   +E LK E+ K      
Sbjct: 617 VTKR----NIATPPPALRQKIESINKDISQEIERVIDVAGLNGKVEELKSEITKG----- 667

Query: 277 VTSKNKIEALEHQIKQRLSSAINS 300
            +S  K+E LE +IK+++ SA+++
Sbjct: 668 -SSSEKVEKLESEIKEKILSALDA 690