Jatropha Genome Database

JcCB0050421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0050421.10 - phase: 0 /partial
         (124 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30040.m000266 conserved hypothetical protein                          238   4e-64

>30040.m000266 conserved hypothetical protein
          Length = 265

 Score =  238 bits (608), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/124 (92%), Positives = 121/124 (97%)

Query: 1   MAWINIRKLLLFSAIFRLILIIYGEWQDSHMEVRYTDVDYLVFSDAASLMASGESPYKRS 60
           MAWIN+ KLLLFSAIFRLILIIYGEWQD+HMEVRYTDVDYLVFSDAASLMASGESPYKRS
Sbjct: 1   MAWINMSKLLLFSAIFRLILIIYGEWQDAHMEVRYTDVDYLVFSDAASLMASGESPYKRS 60

Query: 61  TYRYSPLLAFLLIPNSLIHRSWGKFLFSASDLLVGLFIHSILKRRKVPEDLCLYSVMVWL 120
           TYRYSPLLAFLLIPNS+IHRSWGKF+FSASDLLVGLFIH ILKRR+VPEDL +YSVMVWL
Sbjct: 61  TYRYSPLLAFLLIPNSIIHRSWGKFIFSASDLLVGLFIHKILKRRRVPEDLSIYSVMVWL 120

Query: 121 LNPF 124
           LNPF
Sbjct: 121 LNPF 124