Jatropha Genome Database

JcCB0049611.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0049611.20 - phase: 0 /partial/short
         (45 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28124.m000248 conserved hypothetical protein                           68   9e-13

>28124.m000248 conserved hypothetical protein
          Length = 386

 Score = 67.8 bits (164), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/43 (74%), Positives = 35/43 (81%)

Query: 1   MADDLVTFDGGYQMTLLPGGMYMGYPSDIAKNKAEPLSLMLSL 43
           MADDLVTF+GGYQ+TLLPGGMYMG PSDIAK+ AE  S  L  
Sbjct: 311 MADDLVTFEGGYQITLLPGGMYMGCPSDIAKSVAESKSFHLEF 353