Jatropha Genome Database

JcCB0046961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0046961.10 + phase: 0 /partial
         (249 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30055.m001532 oxidoreductase, acting on the CH-CH group of donor...   380   e-106
30055.m001531 Male sterility protein, putative                        248   2e-66
29791.m000527 Male sterility protein, putative                        244   2e-65
28902.m000037 Male sterility protein, putative                        148   3e-36
33081.m000012 conserved hypothetical protein                           71   5e-13
30029.m000017 conserved hypothetical protein                           59   2e-09
28516.m000032 Male sterility protein, putative                         58   4e-09

>30055.m001532 oxidoreductase, acting on the CH-CH group of donors,
           putative
          Length = 414

 Score =  380 bits (976), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/249 (74%), Positives = 210/249 (84%)

Query: 1   MGEMLVGHLKGNLSVVIVRPTIVTSTYKEPFPGWVEGVRTIDSLAVGYAKGRLTCFLGDI 60
           MGEM+VGHLK NLSVVI+RPTI+TSTYKEPFPGWVEGVRTIDSLAVGY KGRLTCFLGDI
Sbjct: 166 MGEMIVGHLKENLSVVILRPTIITSTYKEPFPGWVEGVRTIDSLAVGYGKGRLTCFLGDI 225

Query: 61  NGIVDVIPGDXXXXXXXXXXXXXXXEPSDNAIYQVGSSVRHPVRYSNLQDYGLSYFTRKP 120
           NGIVDVIP D                PS+NAIYQVGSSVRHP+RY+NLQDYGL+YFT+KP
Sbjct: 226 NGIVDVIPADMVVNAIIVAMTAHANRPSENAIYQVGSSVRHPLRYANLQDYGLNYFTKKP 285

Query: 121 WIXXXXXXXXXXXXXXLETMNSFHRYMALRYLLLLKGLEFANTAFCNHFEGMYSDLSRKI 180
           WI              L++M SF RYMA+RYLLLLKGLE ANTAFC++F+G+YSDL+RKI
Sbjct: 286 WIGKDGKPVKVGKVKVLDSMASFRRYMAVRYLLLLKGLELANTAFCHYFQGIYSDLNRKI 345

Query: 181 NYVMKLVELYRPYLFFKGVFDDMNTEKLRMAAKENGVENDLFYFDPKSIDWENYFTNIHI 240
           N+VMKLVELYRPYLFF+GVFDD+NTEKLRMAA+ENG E D+FYFDPKSIDWE+YF N+HI
Sbjct: 346 NFVMKLVELYRPYLFFQGVFDDINTEKLRMAARENGTEIDMFYFDPKSIDWEDYFVNVHI 405

Query: 241 PGIVKYVFK 249
           PG+VKYVFK
Sbjct: 406 PGVVKYVFK 414


>30055.m001531 Male sterility protein, putative
          Length = 493

 Score =  248 bits (633), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 112/251 (44%), Positives = 162/251 (64%), Gaps = 3/251 (1%)

Query: 1   MGEMLVGHLKGNLSVVIVRPTIVTSTYKEPFPGWVEGVRTIDSLAVGYAKGRLTCFLGDI 60
           MGEM++ H+K +LS++I+RPT++TSTY+EPFPGW+EG RT+DS+ VGY KG++ CF+   
Sbjct: 243 MGEMILMHMKEDLSLLIIRPTMITSTYREPFPGWIEGARTVDSVIVGYGKGKVGCFVSRP 302

Query: 61  NGIVDVIPGDXXXXXXXXXXXXXXXEPSDNAIYQVGSSVRHPVRYSNLQDYGLSYFTRKP 120
             ++DVIP D               + +   IYQ+GSS+R+P++ S++ D+   YF+  P
Sbjct: 303 ESVLDVIPADMVVNGIIVAMATRAQKQASEIIYQIGSSLRNPLKLSSVNDFSYRYFSANP 362

Query: 121 WIXXXXXXXXXXXXXXLETMNSFHRYMALRYLLLLKGLEFANTAFCNHFEGMYSDLSRKI 180
           WI              L +M  F+ YMA R+ L LK L+ A      +++ M + L RK+
Sbjct: 363 WINKEGVPVKTSKAIILSSMTKFYIYMAFRFQLPLKALQVATILVLKNYQDMCTVLDRKV 422

Query: 181 NYVMKLVELYRPYLFFKGVFDDMNTEKLRMAAKENGV---ENDLFYFDPKSIDWENYFTN 237
             VM+LV+LY+PY+FF+G FDD N+EKLR+ A+E  +   E D F FDP  IDWENY  +
Sbjct: 423 KLVMRLVQLYKPYVFFEGSFDDSNSEKLRIEARERSLELKEMDEFNFDPTEIDWENYMMS 482

Query: 238 IHIPGIVKYVF 248
           +HIPG+VKYV 
Sbjct: 483 VHIPGLVKYVM 493


>29791.m000527 Male sterility protein, putative
          Length = 493

 Score =  244 bits (624), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 115/251 (45%), Positives = 156/251 (62%), Gaps = 3/251 (1%)

Query: 1   MGEMLVGHLKGNLSVVIVRPTIVTSTYKEPFPGWVEGVRTIDSLAVGYAKGRLTCFLGDI 60
           M EML+ H+K NL ++I+RPT++TSTYK+PFPGW+EGVRTIDS+ VGY K ++TCF+   
Sbjct: 243 MAEMLLVHMKENLPLLIIRPTMITSTYKQPFPGWIEGVRTIDSVIVGYGKRKITCFVSSP 302

Query: 61  NGIVDVIPGDXXXXXXXXXXXXXXXEPSDNAIYQVGSSVRHPVRYSNLQDYGLSYFTRKP 120
             I+DVIP D               + S   IYQ+GSS+R+P+++SN+ D+   YF+  P
Sbjct: 303 RSILDVIPADMVVNGIIVAMATRYQKQSSEIIYQIGSSLRNPLKFSNIHDFAYRYFSANP 362

Query: 121 WIXXXXXXXXXXXXXXLETMNSFHRYMALRYLLLLKGLEFANTAFCNHFEGMYSDLSRKI 180
           WI              L +M SFH YMA+ + L LK  E A T     ++  Y  L RK+
Sbjct: 363 WIDKEGSPVKIGKGIVLSSMTSFHMYMAVCFQLPLKAFELATTLVLKEYQDKYRLLDRKV 422

Query: 181 NYVMKLVELYRPYLFFKGVFDDMNTEKLRMAAKENGV---ENDLFYFDPKSIDWENYFTN 237
             V +LV+LY+ YLFF+G+FDD N EKLR  A+   +   E D F FDP +IDWE+Y   
Sbjct: 423 KLVQRLVDLYKSYLFFEGIFDDTNLEKLRTEARLRSLEVEEMDEFNFDPTNIDWEDYMMG 482

Query: 238 IHIPGIVKYVF 248
           +HIPG+VKY  
Sbjct: 483 VHIPGLVKYTM 493


>28902.m000037 Male sterility protein, putative
          Length = 442

 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/253 (35%), Positives = 132/253 (52%), Gaps = 12/253 (4%)

Query: 1   MGEMLVGHLKGNLSVVIVRPTIVTSTYKEPFPGWVEGVRTIDSLAVGYAKGRLTCFLGDI 60
           MGEM++  ++G + VVI+RP+I+ STY++PFPGW++G R +D L V Y KG+LTCFL D 
Sbjct: 194 MGEMIIDSMRGEIPVVIIRPSIIESTYRDPFPGWIQGNRMLDPLMVYYGKGQLTCFLADP 253

Query: 61  NGIVDVIPGDXXXXXXXXXXXX--XXXEPSDNAIYQVGSSVRHPVRYSNLQDYGLSYFTR 118
           N +VD++P D                 EP  N IYQVGSSV +P+    L      +F  
Sbjct: 254 NCVVDIVPADTVVNATLAAVAKHGMTREPVIN-IYQVGSSVVNPLTLQELVTLVFEHFKC 312

Query: 119 KPWIXXXXXXXXXXXXXXLETMNSFHRYMALRYLLLLKGLEFANTAFCNHFE-GMYSDLS 177
            P++              L T  S   +       + K  EF    F N     +Y+   
Sbjct: 313 NPFLDSKGNPINVTAPMKLCT--SVEEFSTHLKTDVAKQREFMAMEFKNSKRPEIYA--Q 368

Query: 178 RKINYVMKLVELYRPYLFFKGVFDDMNTEKL-RMAAKENGVENDLFYFDPKSIDWENYFT 236
           + +  V +L  +Y+PY F+KG FD  N + L    ++E  +E   F FD KSIDW +Y  
Sbjct: 369 KLMELVRQLATIYKPYGFYKGRFDCSNLQGLMENMSEEEKIE---FGFDVKSIDWGHYIK 425

Query: 237 NIHIPGIVKYVFK 249
           N+H+PG+  +V +
Sbjct: 426 NVHVPGLRMHVMQ 438


>33081.m000012 conserved hypothetical protein
          Length = 177

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 5/159 (3%)

Query: 92  IYQVGSSVRHPVRYSNLQDYGLSYFTRKPWIXXXXXXXXXXXXXXLETMNSFHRYMALRY 151
           +YQ+ SSV +P+ + +L      ++   P++                +M  F  ++  R 
Sbjct: 17  VYQIASSVVNPLVFKDLAKLLYEHYNSTPYMDSKGKPIHVPSMKLFNSMEDFSEHL-WRD 75

Query: 152 LLLLKGLEFANTAFCNHFEGMYSDLSRK-INYVMKLVELYRPYLFFKGVFDDMNTEKLRM 210
           ++   GL  A  +        Y  + RK +     L  +Y PY F+ G FD+ NT++L  
Sbjct: 76  VIQRNGLT-AMASSDGKLSKKYELICRKSVEQAKYLANIYEPYTFYGGRFDNSNTQRLME 134

Query: 211 AAKENGVENDLFYFDPKSIDWENYFTNIHIPGIVKYVFK 249
           +  E   +N  F FD ++IDW  Y  N+HIPG+ K+V K
Sbjct: 135 SMSETEKKN--FGFDVENIDWREYIINVHIPGLRKHVMK 171


>30029.m000017 conserved hypothetical protein
          Length = 285

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 32/39 (82%)

Query: 1   MGEMLVGHLKGNLSVVIVRPTIVTSTYKEPFPGWVEGVR 39
           MGEM++  ++G + VVI+RP+I+ STYKEPF GW++G R
Sbjct: 247 MGEMVIDSMRGEVPVVIIRPSIIESTYKEPFSGWIQGNR 285


>28516.m000032 Male sterility protein, putative
          Length = 387

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 31/37 (83%)

Query: 1   MGEMLVGHLKGNLSVVIVRPTIVTSTYKEPFPGWVEG 37
           MGEM++  ++G + VVI+RP+++ ST +EPFPGW+EG
Sbjct: 350 MGEMMIDSMRGEIPVVIIRPSVIESTCREPFPGWMEG 386