Jatropha Genome Database
- JcCB0045901.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0045901.20 - phase: 2 /partial
(209 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30204.m001816 Phytochrome-interacting factor, putative 194 4e-50
30128.m008988 conserved hypothetical protein 74 4e-14
30170.m013852 conserved hypothetical protein 69 2e-12
30115.m001235 conserved hypothetical protein 68 4e-12
30076.m004542 hypothetical protein 63 9e-11
30138.m004021 DNA binding protein, putative 61 4e-10
30174.m008814 DNA binding protein, putative 58 3e-09
29737.m001209 conserved hypothetical protein 58 4e-09
30066.m000752 hypothetical protein 52 1e-07
29739.m003684 DNA-directed RNA polymerase beta chain, putative 52 1e-07
29598.m000464 conserved hypothetical protein 52 2e-07
30066.m000750 hypothetical protein 51 4e-07
>30204.m001816 Phytochrome-interacting factor, putative
Length = 572
Score = 194 bits (492), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 110/198 (55%), Positives = 119/198 (60%), Gaps = 3/198 (1%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQXXXXXXXXXXXXFSGIQQYXX 60
INEKMRALQ IPRCNKSDKASMLDEAIEYLKSLQLQVQ F GIQQY
Sbjct: 376 INEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPMMFPGIQQYMP 435
Query: 61 XXXXXXXXXXXXXXXXNRPMMPFPNVXXXXXXXXXXXXXXXXX-RFPMPAFHMPPVPTPG 119
+RPMMPFPNV RF MPAFHMPPVP
Sbjct: 436 PMGMGMGIGMGMEMGMSRPMMPFPNVLSGAPLPTQAAAAAHLGPRFHMPAFHMPPVP--A 493
Query: 120 PDPSRIQAANQSDPMLSAISAQTSHQPGVPSFADXXXXXXXXXXXXXXVSQNQVMTRPST 179
PDPSRIQAA+QSDPM+SAIS Q +QP +P+F D V +NQ M +PST
Sbjct: 494 PDPSRIQAASQSDPMVSAISTQNPNQPRLPNFVDPYQQYLGLQQLQIPVPENQAMAQPST 553
Query: 180 SKPGTNQGPENVDNHQSG 197
SKPG NQG EN+DNHQSG
Sbjct: 554 SKPGANQGAENLDNHQSG 571
>30128.m008988 conserved hypothetical protein
Length = 758
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/39 (87%), Positives = 35/39 (89%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INEKMRALQ IP CNK DKASMLDEAIEYLK+LQLQVQ
Sbjct: 481 INEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQ 519
>30170.m013852 conserved hypothetical protein
Length = 312
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 35/39 (89%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INEKM+ALQ+ IP NK+DKASMLDEAIEYLK LQLQVQ
Sbjct: 141 INEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 179
>30115.m001235 conserved hypothetical protein
Length = 406
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 35/39 (89%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INEKM+ALQ+ IP NK+DKASMLDEAIEYLK LQLQVQ
Sbjct: 177 INEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 215
>30076.m004542 hypothetical protein
Length = 584
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 35/39 (89%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
IN+KMRALQ+ IP +K DKASMLD+AIEYLK+LQLQ+Q
Sbjct: 396 INKKMRALQALIPNSDKVDKASMLDKAIEYLKTLQLQLQ 434
>30138.m004021 DNA binding protein, putative
Length = 440
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 32/39 (82%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
IN+KM+ALQ +P +K+DKASMLDE IEYLK LQ QVQ
Sbjct: 263 INQKMKALQKLVPNASKTDKASMLDEVIEYLKQLQAQVQ 301
>30174.m008814 DNA binding protein, putative
Length = 465
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
IN++M+ LQ +P +K+DKASMLDE IEYLK LQ QVQ
Sbjct: 299 INQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQ 337
>29737.m001209 conserved hypothetical protein
Length = 474
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
I E+M+ALQ +P NK+DKASMLDE I+Y+K LQLQV+
Sbjct: 278 IAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVK 316
>30066.m000752 hypothetical protein
Length = 243
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 30/36 (83%)
Query: 4 KMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
KM++L+ IP C+K D+ASMLD+AI YLK+L+L V+
Sbjct: 101 KMKSLRELIPHCHKQDRASMLDDAINYLKALKLHVE 136
>29739.m003684 DNA-directed RNA polymerase beta chain, putative
Length = 592
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 30/39 (76%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
I E+M+ LQ +P +K DKASMLDE IEY+K LQLQV+
Sbjct: 373 IAERMKNLQELVPNSSKVDKASMLDEIIEYVKFLQLQVK 411
>29598.m000464 conserved hypothetical protein
Length = 326
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 32/39 (82%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
I E+M+ALQ +P NK+D+A+M+DE ++Y+K L+LQV+
Sbjct: 185 IAERMKALQELVPTANKTDRAAMIDEIVDYVKFLRLQVK 223
>30066.m000750 hypothetical protein
Length = 260
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 3 EKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
EK++AL IP C+K D AS+L+ AI+YLK+L+LQV+
Sbjct: 115 EKLKALGELIPHCHKQDTASLLEAAIDYLKALKLQVE 151