Jatropha Genome Database

JcCB0045901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0045901.10 + phase: 1 /partial/short
         (48 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30204.m001815 conserved hypothetical protein                           75   7e-15

>30204.m001815 conserved hypothetical protein
          Length = 125

 Score = 75.1 bits (183), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/47 (78%), Positives = 43/47 (91%)

Query: 1   SSSEIQSALRDESLRKLIRSIDSAADPESELEKAMGVEAFRIFTDKV 47
           SSSEI +AL+DESLRKLI +ID A+DP+SELEKAMGVEAF IFTDK+
Sbjct: 58  SSSEICNALKDESLRKLICAIDDASDPDSELEKAMGVEAFCIFTDKI 104