Jatropha Genome Database

JcCB0045481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0045481.10 + phase: 0 
         (152 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

46032.m000014 transcription factor, putative                          135   7e-33
30178.m000851 transcription factor, putative                           93   4e-20

>46032.m000014 transcription factor, putative
          Length = 164

 Score =  135 bits (340), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 90/153 (58%), Gaps = 7/153 (4%)

Query: 5   SNTKTRFARGFLISLSKIRTGN-----RIGPVSDGEXXXXXXXXXX-AAYSSMARAVGSR 58
           SNTKTRF R FL SL ++R  N     R+G  S  E           A+YSSMARAVGSR
Sbjct: 13  SNTKTRFTRRFLASLLRMRRANNNSNTRVGYASSHEEIRRRSHRIKIASYSSMARAVGSR 72

Query: 59  RAWSRAFLLKVRNRARFRGILXXXXXXXXXXXXXXXXXXXXXREISKTDMLRKLVPGGAA 118
           R WSRA LLK+RNRA+ +GIL                      E+SK D LR LVPGG  
Sbjct: 73  RVWSRALLLKLRNRAKLQGILRNKCFALKKKRKLMVKSKVPG-EMSKADTLRTLVPGGET 131

Query: 119 MDICGLLEETAHYMECLQTQVEVMQNIVDHCSK 151
           MD C LLEETA YM+CL TQV+VMQ+IVD   K
Sbjct: 132 MDFCKLLEETASYMKCLATQVKVMQSIVDRYPK 164


>30178.m000851 transcription factor, putative
          Length = 169

 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 80/154 (51%), Gaps = 11/154 (7%)

Query: 8   KTRFARGFLISLSKI---RTGNRIGPVSD-GEXXXXXXXXXXAAYSSMARAVGSRRAWSR 63
           K+RF +GFL SL KI   R  N I   S  GE          AA  S+A AVG RRAWSR
Sbjct: 15  KSRFTKGFLRSLLKINRQRVRNNIPSCSSPGEFFERCHRVKTAADKSLAFAVGRRRAWSR 74

Query: 64  AFLLKVRNRARFRGILXXXXXXXXXXXXXXXXXXXXXREISKTDM-------LRKLVPGG 116
           A L K+RNRAR R                         +I+  +        LRKLVPG 
Sbjct: 75  AMLFKIRNRARRRRRQHCVLVKRINHHQAKKIICLKKEQINDEEAGFDQASKLRKLVPGS 134

Query: 117 AAMDICGLLEETAHYMECLQTQVEVMQNIVDHCS 150
             MD+C LL+E AHY+ECL TQV+VM++I D CS
Sbjct: 135 EGMDLCSLLDEAAHYIECLNTQVQVMRSIADLCS 168