Jatropha Genome Database

JcCB0044401.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0044401.20 - phase: 0 /partial
         (61 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29693.m001988 conserved hypothetical protein                           77   2e-15
29693.m001989 conserved hypothetical protein                           56   3e-09

>29693.m001988 conserved hypothetical protein
          Length = 164

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 46/60 (76%), Gaps = 2/60 (3%)

Query: 1   MEEKLK-SPVGTPTCSSETASQKLPSQLCRPSAGLSMKRSIQRFLQKRNHRIHATSPYNH 59
           ME+K+K S +GTPT  SE  S  LPS LC PS GLSMKRSIQRFLQKR HR  ATSPYN+
Sbjct: 106 MEDKMKTSLLGTPTGRSEFVS-PLPSPLCSPSTGLSMKRSIQRFLQKRKHRAQATSPYNY 164


>29693.m001989 conserved hypothetical protein
          Length = 139

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/35 (74%), Positives = 29/35 (82%)

Query: 23  LPSQLCRPSAGLSMKRSIQRFLQKRNHRIHATSPY 57
           LPS +  P+ GLSMKRS+QRFLQKRNHRI AT PY
Sbjct: 94  LPSPIYSPNNGLSMKRSLQRFLQKRNHRIQATCPY 128