Jatropha Genome Database

JcCB0044401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0044401.10 + phase: 0 /partial/short
         (43 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29693.m001985 (S)-2-hydroxy-acid oxidase, putative                     82   4e-17
29727.m000482 (S)-2-hydroxy-acid oxidase, putative                     46   5e-06
29727.m000486 (S)-2-hydroxy-acid oxidase, putative                     45   5e-06
29727.m000485 (S)-2-hydroxy-acid oxidase, putative                     45   6e-06

>29693.m001985 (S)-2-hydroxy-acid oxidase, putative
          Length = 369

 Score = 82.4 bits (202), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/40 (92%), Positives = 39/40 (97%)

Query: 1   KVLQMLREEFELTMALSGCRSLREITRNHIVADWDLPRPV 40
           KVLQMLR+EFELTMALSGCRSLREITR+HIV DWDLPRPV
Sbjct: 325 KVLQMLRDEFELTMALSGCRSLREITRDHIVTDWDLPRPV 364


>29727.m000482 (S)-2-hydroxy-acid oxidase, putative
          Length = 300

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 29/35 (82%)

Query: 1   KVLQMLREEFELTMALSGCRSLREITRNHIVADWD 35
           +V++ML++E ELTMALS C SL++ITR+H+  + D
Sbjct: 260 QVMKMLKDELELTMALSACPSLKDITRSHVRTERD 294


>29727.m000486 (S)-2-hydroxy-acid oxidase, putative
          Length = 364

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 28/30 (93%)

Query: 1   KVLQMLREEFELTMALSGCRSLREITRNHI 30
           +V++ML++E E+TMALSGC +L++ITR+H+
Sbjct: 324 QVMKMLKDELEITMALSGCATLKDITRSHV 353


>29727.m000485 (S)-2-hydroxy-acid oxidase, putative
          Length = 146

 Score = 45.4 bits (106), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 30/35 (85%)

Query: 1   KVLQMLREEFELTMALSGCRSLREITRNHIVADWD 35
           +V+++L++E ELTMALSGC SL++ITR+H+  + D
Sbjct: 106 QVMKILKDELELTMALSGCPSLKDITRSHVRTERD 140