Jatropha Genome Database
- JcCB0044181.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0044181.20 + phase: 0 /pseudo/partial
(233 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30205.m001606 chaperonin containing t-complex protein 1, zeta su... 346 6e-96
29929.m004774 chaperonin containing t-complex protein 1, epsilon... 92 3e-19
29656.m000497 chaperonin containing t-complex protein 1, gamma s... 90 1e-18
30051.m000523 chaperonin containing t-complex protein 1, alpha s... 84 5e-17
30110.m000716 chaperonin containing t-complex protein 1, delta s... 79 1e-15
29171.m000267 chaperonin containing t-complex protein 1, eta sub... 78 3e-15
30170.m014313 chaperonin containing t-complex protein 1, beta su... 75 2e-14
29950.m001141 chaperonin containing t-complex protein 1, theta s... 68 3e-12
28842.m000936 rubisco subunit binding-protein beta subunit, rubb... 50 9e-07
30204.m001817 chaperonin-60kD, ch60, putative 49 2e-06
30138.m003862 rubisco subunit binding-protein beta subunit, rubb... 47 8e-06
>30205.m001606 chaperonin containing t-complex protein 1, zeta
subunit, tcpz, putative
Length = 535
Score = 346 bits (887), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 177/219 (80%), Positives = 185/219 (84%), Gaps = 21/219 (9%)
Query: 1 MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGN 60
MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLK+NLGPKGTIKMLVGGAGDIKLTKDGN
Sbjct: 1 MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKSNLGPKGTIKMLVGGAGDIKLTKDGN 60
Query: 61 TLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERYIDEGCFKFFVAL 120
TLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERYI EG
Sbjct: 61 TLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERYIGEG-------- 112
Query: 121 NLIIGLLHCMHPRVLVDGFEVAKRATLQFLEKFKTPVIMGDEPDKEILKMVARTTLRTKL 180
MHPRVLVDGFE+AKRATLQFLEKFKTPV+MGDEPDKEILKMVARTTLRTKL
Sbjct: 113 ---------MHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKL 163
Query: 181 YEALADQLTDIVVNAV----SLRTSVDFFFFQVFKGKSK 215
YE LADQLTDIVVNAV ++D F ++ + K
Sbjct: 164 YETLADQLTDIVVNAVLCIRKPEEAIDLFMVEIMHMRHK 202
>29929.m004774 chaperonin containing t-complex protein 1, epsilon
subunit, tcpe, putative
Length = 535
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 18/179 (10%)
Query: 18 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIA 77
A NI+A K + +L+T+LGPKG KML GD+ +T DG T+L++M + N A ++
Sbjct: 29 AQKANISAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMV 88
Query: 78 RTAVAQDDISGDGTTSTVIFIGELMKQSERYIDEGCFKFFVALNLIIGLLHCMHPRVLVD 137
+ +QD GDGTT V+ G L++Q+E+ ++ G +HP + +
Sbjct: 89 ELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERG-----------------IHPIRVAE 131
Query: 138 GFEVAKRATLQFLEKFKTPVIMGDEPDKEILKMVARTTLRTKLYEALADQLTDIVVNAV 196
G+E+A + ++ LE G D E L TTL +K+ L +I V AV
Sbjct: 132 GYEMASKIAVEHLEHISEKFDFGLN-DIEPLVQTCMTTLSSKIVNRCKRSLAEISVKAV 189
>29656.m000497 chaperonin containing t-complex protein 1, gamma
subunit, tcpg, putative
Length = 554
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 20/178 (11%)
Query: 20 HMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIART 79
H NI A+K + D+++T LGP+ +KML+ AG I +T DGN +L+E+ + +P A +
Sbjct: 22 HANIQASKAVADIIRTTLGPRSMLKMLLDAAGGIVVTNDGNAILRELDLAHPAAKSMIEL 81
Query: 80 AVAQDDISGDGTTSTVIFIGELMKQSERYIDEGCFKFFVALNLIIGLLHCMHPRVLVDGF 139
+ QD+ GDGTTS ++ GE++ +E +ID+ HP V+ +
Sbjct: 82 SRTQDEEVGDGTTSVIVLAGEMLHVAEAFIDKS-----------------YHPTVICRAY 124
Query: 140 EVAKRATLQFLEKFKTPVIMGDEPDKEILKMVARTTLRTKLYEALADQLTDIVVNAVS 197
A + L+K + D D+ L + ++ + TK D + D+ ++A +
Sbjct: 125 IKALEDAIAVLDKIAMSI---DVNDRATLLGLVKSCIGTKFTSQFGDLIADLAIDATT 179
>30051.m000523 chaperonin containing t-complex protein 1, alpha
subunit, tcpa, putative
Length = 546
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 96/176 (54%), Gaps = 21/176 (11%)
Query: 22 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAV 81
N+ A + + +++K++LGP G KMLV GD+ +T DG T+LK +++++P A ++ A
Sbjct: 24 NVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAE 83
Query: 82 AQDDISGDGTTSTVIFIGELMKQSERYIDEGCFKFFVALNLIIGLLHCMHPRVLVDGFEV 141
QD GDGTTS VI EL+K++ + + +HP ++ G+ +
Sbjct: 84 LQDREVGDGTTSVVIVAAELLKRANDLV-----------------RNKIHPTSIISGYRL 126
Query: 142 AKRATLQFL-EKFKTPVIMGDEPDKEILKMVARTTLRTKLYEALADQLTDIVVNAV 196
A R +++ EK V ++ K+ L A+T++ +KL +D ++VV+AV
Sbjct: 127 AMREACKYVDEKLAVKV---EKLGKDSLVNCAKTSMSSKLIAGDSDFFANLVVDAV 179
>30110.m000716 chaperonin containing t-complex protein 1, delta
subunit, tcpd, putative
Length = 533
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 20/177 (11%)
Query: 20 HMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIART 79
H NI AA+ + D ++T+LGP+G KM+ +G++ +T DG T+L +M++ P A M+
Sbjct: 28 HANIVAARAVADAVRTSLGPRGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVEL 87
Query: 80 AVAQDDISGDGTTSTVIFIGELMKQSERYIDEGCFKFFVALNLIIGLLHCMHPRVLVDGF 139
+ +QD +GDGTT+ V+ G L+KQ C L +HP V+ D
Sbjct: 88 SKSQDAAAGDGTTTVVVIAGALLKQ--------CLSL---------LSSGIHPTVISDSL 130
Query: 140 EVAKRATLQFLEKFKTPVIMGDEPDKEILKMVARTTLRTKLYEALADQLTDIVVNAV 196
A + L PV + D++ L A T+L +K+ + L + V+AV
Sbjct: 131 HKASIKAVDVLTAMAVPVELS---DRDSLIKSASTSLNSKVVSQYSTLLAPLAVDAV 184
>29171.m000267 chaperonin containing t-complex protein 1, eta
subunit, tcph, putative
Length = 563
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 18/181 (9%)
Query: 17 AALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMI 76
A L NINA + DV++T LGP+G K++ G++ ++ DG T++K + I +P A ++
Sbjct: 23 AQLVSNINACTAVADVVRTTLGPRGMDKLIHDDKGNVTISNDGATIMKLLDIVHPAAKIL 82
Query: 77 ARTAVAQDDISGDGTTSTVIFIGELMKQSERYIDEGCFKFFVALNLIIGLLHCMHPRVLV 136
A +QD GDGTT+ V+ E +K+++ +I++G +H + L+
Sbjct: 83 VDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDG-----------------VHSQNLI 125
Query: 137 DGFEVAKRATLQFLEKFKTPVIMGD-EPDKEILKMVARTTLRTKLYEALADQLTDIVVNA 195
+ A L+ + + + E K +L A TTL +KL + +VV+A
Sbjct: 126 RSYRTACNLALEKIRELAFSIEGKSIEEKKSLLAKCASTTLSSKLIGGEKEFFAQMVVDA 185
Query: 196 V 196
V
Sbjct: 186 V 186
>30170.m014313 chaperonin containing t-complex protein 1, beta
subunit, tcpb, putative
Length = 512
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 25 AAKGLQDVLKTNLGPKGTIKML--VGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVA 82
A + D++KT LGPKG K+L G ++ +T DG T+LK + I NP A ++ +
Sbjct: 26 GAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKV 85
Query: 83 QDDISGDGTTSTVIFIGELMKQSERYI 109
QDD GDGTTS V+F GEL++++E+ +
Sbjct: 86 QDDEVGDGTTSVVVFAGELLREAEKLV 112
>29950.m001141 chaperonin containing t-complex protein 1, theta
subunit, tcpq, putative
Length = 517
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 17/136 (12%)
Query: 18 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIA 77
A+ NI+A K L + +T+LGP G KM++ + +T D T++ E+++Q+P A ++
Sbjct: 27 AVLKNIDACKQLSSITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKILV 86
Query: 78 RTAVAQDDISGDGTTSTVIFIGELMKQSERYIDEGCFKFFVALNLIIGLLHCMHPRVLVD 137
AQ + GDG T+ F GEL++ +E I G +HP ++
Sbjct: 87 LAGKAQQEEIGDGANLTISFAGELLQNAEELIRMG-----------------LHPSEIIS 129
Query: 138 GFEVAKRATLQFLEKF 153
G+ T++ L++
Sbjct: 130 GYNKGINKTIEILDEL 145
>28842.m000936 rubisco subunit binding-protein beta subunit, rubb,
putative
Length = 605
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 29 LQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPT----AIMIARTAVAQD 84
L D++ LGPKG +L G K+ DG T+ KE+++++P A ++ + A +
Sbjct: 83 LADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 142
Query: 85 DISGDGTTSTVIFIGELMKQSERYIDEGCFKFFV 118
D++GDGTT++V+ L+ + + + G +
Sbjct: 143 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLI 176
>30204.m001817 chaperonin-60kD, ch60, putative
Length = 575
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 29 LQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQ----NPTAIMIARTAVAQD 84
L D +K +GPKG +L G K+TKDG T+ K ++ Q N A ++ + A A +
Sbjct: 54 LADAVKVTMGPKGRNVVLEQSWGAPKVTKDGVTVAKSIEFQDRVKNVGASLVKQVANATN 113
Query: 85 DISGDGTTSTVIFIGELMKQSERYIDEGCFKFFVALN 121
D++GDGTT + + + EGC +N
Sbjct: 114 DVAGDGTTCATVL-------TRAILVEGCKSVAAGMN 143
>30138.m003862 rubisco subunit binding-protein beta subunit, rubb,
putative
Length = 592
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 31 DVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNP---TAIMIARTAVAQ-DDI 86
+++ LGPKG +L G K+ DG T+LK++++++P + + R A A+ +D+
Sbjct: 61 ELVGVTLGPKGRNVVLENKYGPPKIVNDGETVLKQIELEDPLENVGVKLVRQAGAKTNDL 120
Query: 87 SGDGTTSTVIFIGELMKQSERYIDEGCFKFFVA 119
+GDG+T++V+ L+ + + I G VA
Sbjct: 121 AGDGSTTSVVLAHGLIAEGVKVIAAGMNPVQVA 153