Jatropha Genome Database

JcCB0041981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041981.10 + phase: 0 /partial
         (323 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29773.m000289 methylenetetrahydrofolate dehydrogenase, putative       236   1e-62
34902.m000025 methylenetetrahydrofolate dehydrogenase, putative       192   2e-49
29773.m000286 formate-tetrahydrofolate ligase, putative               190   9e-49
29773.m000290 conserved hypothetical protein                          130   1e-30
29773.m000288 methylenetetrahydrofolate dehydrogenase, putative        68   5e-12

>29773.m000289 methylenetetrahydrofolate dehydrogenase, putative
          Length = 148

 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 113/142 (79%), Positives = 122/142 (85%)

Query: 133 MDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHESSQSDKALFNRLCLPNKEGKRTFSDIM 192
           MD+F LHLTGDIH               RIFHES+QSDKAL NRLC PNKEG+R+FSDIM
Sbjct: 1   MDDFKLHLTGDIHAITAANNLLAAAIDTRIFHESTQSDKALLNRLCPPNKEGRRSFSDIM 60

Query: 193 FRRLKKLGISKTKPEELTAQEIKKFARLDIDPNSITWRRVMDVNDRFLRKITVGQGPEEK 252
           FRRLKKLGISKTKPE+L AQE+KKFARLDIDP+SITWRRVMDVNDRFLRKIT+GQGPEEK
Sbjct: 61  FRRLKKLGISKTKPEDLIAQEVKKFARLDIDPDSITWRRVMDVNDRFLRKITIGQGPEEK 120

Query: 253 GMLRETGFDISVASEIMAVLAL 274
           GM+RETGFDISVASEIM VLAL
Sbjct: 121 GMVRETGFDISVASEIMTVLAL 142


>34902.m000025 methylenetetrahydrofolate dehydrogenase, putative
          Length = 277

 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/308 (37%), Positives = 163/308 (52%), Gaps = 53/308 (17%)

Query: 16  ADIDIANSVEPFHISEIAKDLNLSPNHYDLYGKYKAKVLLSALDELEGSPDGYYVVVGGI 75
           +DI+IA SV    I++I K + +  +  +LYGKYKAK+    +  +E +  G  ++V  I
Sbjct: 3   SDIEIAQSVALQPITDIVKKVGIDGDDIELYGKYKAKLSFEKMKAVEANEPGKLILVTAI 62

Query: 76  TPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDE 135
            PTP GEGKST ++GL  AL   + KK +  LR+PS GP  GIK       Y+QV+PM++
Sbjct: 63  NPTPAGEGKSTMSIGLADALNQ-MGKKTMLALREPSLGPVMGIKGGAAGGGYAQVLPMED 121

Query: 136 FNLHLTGDIHXXXXXXXXXXXXXXXRIFHESSQSDKALFNRLCLPNKEGKRTFSDIMFRR 195
            NLH TGD+H                     + ++ AL                D   ++
Sbjct: 122 INLHFTGDMHAI-------------------TTANNAL------------SALIDNHLQQ 150

Query: 196 LKKLGISKTKPEELTAQEIKKFARLDIDPNSITWRRVMDVNDRFLRKITVGQGPEEKGML 255
              LGI                     DP  I W+RV+D+NDR LR++ VG G    G+ 
Sbjct: 151 GNDLGI---------------------DPRRIIWKRVLDLNDRALRQVIVGLGSPVNGVP 189

Query: 256 RETGFDISVASEIMAVLALTTSLADMRERLGNMVVGNSKAGDPITADDLGVGGALTVLMK 315
           RE GFDI+VASEIMA+L L T L D+++RL ++VV  +    P+   DL V GALT+++K
Sbjct: 190 REDGFDITVASEIMAILCLATDLKDLKKRLADIVVAYTYDRKPVYVRDLKVEGALTLILK 249

Query: 316 DAINPTLM 323
           DAI P L+
Sbjct: 250 DAIKPNLV 257


>29773.m000286 formate-tetrahydrofolate ligase, putative
          Length = 415

 Score =  190 bits (482), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 92/103 (89%), Positives = 98/103 (95%), Gaps = 2/103 (1%)

Query: 2   STSR--RKLQVVSPVPADIDIANSVEPFHISEIAKDLNLSPNHYDLYGKYKAKVLLSALD 59
           S+SR  RKL+VVSPVPADIDIANSVEPFHIS+IA +LNLSPNHYDL+GKYKAKVLLS LD
Sbjct: 3   SSSRTVRKLEVVSPVPADIDIANSVEPFHISQIANELNLSPNHYDLFGKYKAKVLLSVLD 62

Query: 60  ELEGSPDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 102
           ELEG+ DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK
Sbjct: 63  ELEGTADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 105


>29773.m000290 conserved hypothetical protein
          Length = 74

 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 64/67 (95%)

Query: 53  VLLSALDELEGSPDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 112
           VLLS LDELEG+ DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ
Sbjct: 1   VLLSVLDELEGTADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 60

Query: 113 GPTFGIK 119
           G TFGIK
Sbjct: 61  GSTFGIK 67


>29773.m000288 methylenetetrahydrofolate dehydrogenase, putative
          Length = 347

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 32/36 (88%), Positives = 35/36 (97%)

Query: 288 MVVGNSKAGDPITADDLGVGGALTVLMKDAINPTLM 323
           MV+GNSKAGDPITADDLG+ GALTVL+KDAINPTLM
Sbjct: 1   MVIGNSKAGDPITADDLGLEGALTVLIKDAINPTLM 36