Jatropha Genome Database

JcCB0041791.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041791.20 - phase: 0 
         (191 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30055.m001618 conserved hypothetical protein                          220   3e-58

>30055.m001618 conserved hypothetical protein
          Length = 194

 Score =  220 bits (561), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 130/195 (66%), Positives = 147/195 (75%), Gaps = 8/195 (4%)

Query: 1   MATTVHFSPFFCAA-FSSNKNLNKCCFGSVEARKSSFRSFKARAIKEKTEERKNPQXXXX 59
           MAT +  SP F AA F SNKN  K   GS++  KS+F++F  RAIKEKT+   +      
Sbjct: 1   MATPLQLSPPFPAASFLSNKNFCKHYTGSLQPLKSTFKNFSTRAIKEKTDSSSS----SS 56

Query: 60  XXAEEIAKKYGLEAGLWKIFSTKEEQ---DGEEKKSKGEQAKELLAKYGGAYXXXXXXXX 116
             AE+I KKYGLEAGLW+IFSTKEE+   DGE KKSKG+QAKELLAKYGGAY        
Sbjct: 57  SSAEDITKKYGLEAGLWQIFSTKEERKEGDGETKKSKGDQAKELLAKYGGAYLATSITLS 116

Query: 117 XXXXXXCYALISAGIDVQALLQKVGISTDEAGEKVGTFALAYAAHKAASPIRFPPTVALT 176
                 CYALI+AGIDVQALLQKVGISTD  GEKVGTFALAYAAHKAASPIRFPPTVALT
Sbjct: 117 FISFSLCYALINAGIDVQALLQKVGISTDATGEKVGTFALAYAAHKAASPIRFPPTVALT 176

Query: 177 PVVASWIGKKVDQDK 191
           P+VA+WIGKKVD++K
Sbjct: 177 PIVATWIGKKVDKEK 191