Jatropha Genome Database

JcCB0041791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041791.10 + phase: 0 /pseudo/partial
         (296 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30055.m001619 E2F4,5, putative                                        258   2e-69
28324.m000396 E2F4,5, putative                                        249   8e-67
30170.m014171 E2F4,5, putative                                        120   8e-28

>30055.m001619 E2F4,5, putative
          Length = 414

 Score =  258 bits (660), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 137/162 (84%), Positives = 146/162 (90%), Gaps = 3/162 (1%)

Query: 69  QIRXTNKMQERLRDLSEDENNQKWLFVTEEDIKSLPSLQNETLIAIKAPHGTTLEVPDPD 128
           QIR   +MQERLRDLSEDENNQKWLFVTEEDIKSLP  QNETLIAIKAPHGTTLEVPDPD
Sbjct: 236 QIR---EMQERLRDLSEDENNQKWLFVTEEDIKSLPCFQNETLIAIKAPHGTTLEVPDPD 292

Query: 129 EAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIQGVEPPPNYPSSSGFNENMDTTMI 188
           EAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEI G EPPP YPSSS FNEN   T++
Sbjct: 293 EAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIHGAEPPPTYPSSSSFNENPAPTVV 352

Query: 189 PGESRGKEIEMQGQDSNRMCSDLTTSQDFVSGLMKIVPSEVD 230
           P + RGKEIEMQG D+ RMCS+L+TSQDFVSG+MKIVPS+VD
Sbjct: 353 PEDGRGKEIEMQGDDAQRMCSELSTSQDFVSGIMKIVPSDVD 394


>28324.m000396 E2F4,5, putative
          Length = 451

 Score =  249 bits (637), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 131/222 (59%), Positives = 154/222 (69%), Gaps = 26/222 (11%)

Query: 73  TNKMQERLRDLSEDENNQKWLFVTEEDIKSLPSLQNETLIAIKAPHGTTLEVPDPDEAVD 132
           T +MQERLR+L EDENNQKWLFVTEEDIKSLP  QN+TLIA+KAPHGTTLEVPDPDEAVD
Sbjct: 254 TREMQERLRELIEDENNQKWLFVTEEDIKSLPCFQNQTLIAVKAPHGTTLEVPDPDEAVD 313

Query: 133 YPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIQGVEPPPNYPSSSGFNENMDTTMIPGES 192
           YPQRRYRI+LRS+MGPIDVYLVSQFEE FEE  G EP  ++P +S    N     IP + 
Sbjct: 314 YPQRRYRIILRSSMGPIDVYLVSQFEENFEEANG-EPSTSFPHASSSCSN----EIPKKQ 368

Query: 193 RGKEIEMQGQDSNRMCSDLTTSQDFVSGLMKIVPSEVDSDADYWLLSDADVSITDMWRTE 252
              E ++Q                      ++ P    +DADYWLLSDADVSITDMWRT+
Sbjct: 369 VINEQKIQ---------------------KRVEPQMQQNDADYWLLSDADVSITDMWRTD 407

Query: 253 PGVEWNEFGTLQDDYGMANVSTPQPQTPPLNPAEVPPNANTT 294
             VEWN+   L+ D+G+ +V TP+ QTPP   AEVP   N+T
Sbjct: 408 ANVEWNDVNMLRADFGIPDVQTPRAQTPPSGMAEVPTGVNST 449


>30170.m014171 E2F4,5, putative
          Length = 386

 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 96/173 (55%), Gaps = 34/173 (19%)

Query: 77  QERLRDLSEDENNQKWLFVTEEDIKSLPSLQNETLIAIKAPHGTTLEVPDPDEAVDYPQR 136
           QE LR L EDEN +++LF+TEEDI SL   QN TL+AIKAP  + LEVPDPDE +  PQ 
Sbjct: 242 QELLRALEEDENKKRYLFMTEEDITSLACYQNRTLLAIKAPQASYLEVPDPDEDIGSPQ- 300

Query: 137 RYRIVLRSTMGPIDVYLVSQFEEKFEEIQGVEPPPNYPSSSGFNENMDTTMIPGESRGKE 196
            Y++++RST GPIDVYL+S    + E                               G  
Sbjct: 301 -YKMIVRSTTGPIDVYLLSPRRVELE-------------------------------GLS 328

Query: 197 IEMQGQDSNRMCSDLTTSQDFVSGLMKIVPSEVDSDADYWLLSDADVSITDMW 249
           +E Q Q+ ++     ++     SG+ KI PS+ D D DYW  SD +VSI+++W
Sbjct: 329 LEHQ-QNQSKNPEVYSSMHSESSGVQKITPSDCDIDDDYWFRSDPEVSISELW 380