Jatropha Genome Database

JcCB0041541.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041541.20 - phase: 2 /pseudo/partial
         (160 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28644.m000929 Shikimate kinase, chloroplast precursor, putative       147   2e-36
28256.m000141 Shikimate kinase, chloroplast precursor, putative       141   2e-34
37321.m000013 conserved hypothetical protein                          127   2e-30
30131.m007013 similarity to shikimate kinase, putative                 76   7e-15

>28644.m000929 Shikimate kinase, chloroplast precursor, putative
          Length = 282

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/120 (58%), Positives = 97/120 (80%)

Query: 19  QTEVLKKLSMMHHVVVSTGGGAVVRPINWQHMRKGISVWLDVPLEALAQRIAAVGTESRP 78
           ++E L+KLS++   VV+TGGG+VVRPINW++MR+GI+V+LDVPL+ALA+RIAAVGT+SRP
Sbjct: 162 ESEALQKLSIIPRQVVATGGGSVVRPINWKYMRQGITVFLDVPLDALARRIAAVGTDSRP 221

Query: 79  LLNHESGDAYTKAFRRLSALLEERGEFYANANTRVSLENIAAKLGYRDVSSISPTAIAIE 138
           LL+ +SGD YTKAF  L  L ++R E Y++A+  VSL ++A  LG+ DVS + P AIA+ 
Sbjct: 222 LLHLDSGDPYTKAFMGLFTLSKKRVEAYSDADVIVSLLDLADDLGFEDVSDVGPAAIALR 281


>28256.m000141 Shikimate kinase, chloroplast precursor, putative
          Length = 313

 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/107 (67%), Positives = 83/107 (77%), Gaps = 3/107 (2%)

Query: 19  QTEVLKKLSMMHHVVVSTGGGAVVRPINWQHMRKGISVWLDVPLEALAQRIAAVGTESRP 78
           +TEVLK LSMMH +VVSTGGGAV+RPINW++M+KGISVWLDVPLEALAQRIAAVGT+SRP
Sbjct: 166 ETEVLKNLSMMHQIVVSTGGGAVIRPINWEYMQKGISVWLDVPLEALAQRIAAVGTDSRP 225

Query: 79  LLNHESGDAYTKAFRRLSALLEERGEFYANANTRVSLENIAAKLGYR 125
           LL+HESGDAYTK     S LL  R   Y       + + +A KL YR
Sbjct: 226 LLHHESGDAYTKVGTLSSFLLFMR---YRAIRIGFTSDLLARKLPYR 269


>37321.m000013 conserved hypothetical protein
          Length = 180

 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 82/97 (84%)

Query: 19  QTEVLKKLSMMHHVVVSTGGGAVVRPINWQHMRKGISVWLDVPLEALAQRIAAVGTESRP 78
           ++E L+KLS++   VV+TGGG+VVRPINW++MR+GI+V+LDVPL+ALA+RIAAVGT+SRP
Sbjct: 48  ESEALQKLSIIPRQVVATGGGSVVRPINWKYMRQGITVFLDVPLDALARRIAAVGTDSRP 107

Query: 79  LLNHESGDAYTKAFRRLSALLEERGEFYANANTRVSL 115
           LL+ +SGD YTKAF  L  L ++R E Y++A+  VSL
Sbjct: 108 LLHLDSGDPYTKAFMGLFTLSKKRVEAYSDADVTVSL 144


>30131.m007013 similarity to shikimate kinase, putative
          Length = 292

 Score = 75.9 bits (185), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 8/125 (6%)

Query: 19  QTEVLKKLSMMHHVVVSTGGGAVVRPINWQHMRKGISVWLDVPLEALAQRIAAVGTESRP 78
           +TEVLK+LS M  +VV  G GAV    N   +R GIS+W+DVPL+ +AQ   A+  ES  
Sbjct: 159 ETEVLKQLSSMGRLVVCAGDGAVQSFTNLALLRHGISLWIDVPLDMVAQ---AMSEESDQ 215

Query: 79  LLNHESGDAYTKAFRRLSALLEERGEFYANANTRVSLENIAAKLGYRDVSSISPTAIAIE 138
           L    SG A ++    L A  E     YA A+  +SL+ +A  LGY  + S++   + +E
Sbjct: 216 L----SG-ADSEELTELIATFEAMRGGYATADATISLQKVAVNLGYDALDSVTAEDMTLE 270

Query: 139 ALEQI 143
            L++I
Sbjct: 271 VLKEI 275