Jatropha Genome Database

JcCB0041541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041541.10 + phase: 0 /pseudo/partial
         (106 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28256.m000140 Protein AFR, putative                                   120   1e-28

>28256.m000140 Protein AFR, putative
          Length = 370

 Score =  120 bits (301), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 72/88 (81%), Gaps = 5/88 (5%)

Query: 20  FLGEIRGFDMKKGFWKELRGVEKELPRFLAGATMANVGGMLMVVWEKTXXXXXXXKEMEI 79
           FLG+I+GFD++K  WKELRGVEKELP FLAGATMANVGG L+VVWEK        KE+EI
Sbjct: 272 FLGKIKGFDVEKDSWKELRGVEKELPTFLAGATMANVGGKLVVVWEK----KGNGKELEI 327

Query: 80  WCAEIEVEKN-VKEELWGKVKWCDVVHK 106
           WCAEIEVEK    +E+WGK+KWCDV+HK
Sbjct: 328 WCAEIEVEKKGEDQEIWGKIKWCDVIHK 355