Jatropha Genome Database

JcCB0041131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041131.10 + phase: 0 /pseudo
         (234 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29904.m002958 conserved hypothetical protein                          147   3e-36
30204.m001765 conserved hypothetical protein                           87   9e-18

>29904.m002958 conserved hypothetical protein
          Length = 266

 Score =  147 bits (372), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/250 (43%), Positives = 122/250 (48%), Gaps = 22/250 (8%)

Query: 1   MRKAKTTGEVAVMDLSLGVRTRAKTLALQRQARLXXXXXXXXXXXXXXXXXX--XXXYLQ 58
           +RKAKTT EVAVMDLS GVRTRAKTLALQRQ +                        YLQ
Sbjct: 5   IRKAKTTSEVAVMDLSFGVRTRAKTLALQRQRQRQRQRQPPPPPPPHPPSPPSSAGGYLQ 64

Query: 59  LRSRRLVK-PPTLVNDSKRQKQSQNKEAQNPN------------PNXXXXXXXXXXXXXX 105
           LRSRRLVK PP LV+ SKRQK   +  +                                
Sbjct: 65  LRSRRLVKKPPILVHVSKRQKDGHSSNSNKVGLNPNNSNNNNSNSISSSKSGSRVRVSPG 124

Query: 106 XXQKNEVSGENKEEVQXXXXXXXXXXXXXXXXXXXXLGIE-ASFGENVLDIEGRERSTRE 164
              K E +G    E +                    LG+E ASFGENVLDIEGRE STRE
Sbjct: 125 SGPKEEFAGSGNREEEIVEKNKSCADDNNNNNESKDLGVEEASFGENVLDIEGRESSTRE 184

Query: 165 STPCSLIRDPEXXXXXXXXXXXXXXXXXXXXIQNSAHRHIPTSLEMDEFFARAEEEQQRQ 224
           STPCSLIRDPE                     + S  RHIPT+ EMDEFF  AEEEQQ++
Sbjct: 185 STPCSLIRDPESIRTPGSTTRPSSTEPN----RTSMRRHIPTAHEMDEFFTGAEEEQQKR 240

Query: 225 FIEKXIYSFN 234
           FIEK  Y+F+
Sbjct: 241 FIEK--YNFD 248


>30204.m001765 conserved hypothetical protein
          Length = 239

 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 2/93 (2%)

Query: 142 LGIEASFGENVLDIEGRERSTRESTPCSLIRDPEXXXXXXXXXXXXXXXXXXXXIQNSAH 201
            G+E SFGEN LD + R+RSTRESTPC+LI+D +                    ++N+  
Sbjct: 131 FGVEVSFGENYLDSDSRDRSTRESTPCNLIKDSDATGTPCSTTGQASSTATNRRVRNNIQ 190

Query: 202 RHIPTSLEMDEFFARAEEEQQRQFIEKXIYSFN 234
           R IPT+ EM+EFF  AE+ Q+R FIEK  Y+F+
Sbjct: 191 RSIPTTHEMEEFFTCAEQRQRRLFIEK--YNFD 221