Jatropha Genome Database

JcCB0040601.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0040601.20 - phase: 0 
         (270 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30138.m003857 conserved hypothetical protein                          409   e-115

>30138.m003857 conserved hypothetical protein
          Length = 269

 Score =  409 bits (1052), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/270 (76%), Positives = 224/270 (82%), Gaps = 1/270 (0%)

Query: 1   MEDVLTEIPPPSRFFQEDLXXXXXXXXXXXXXXXXXXXXKPDQPLCPSLLIIALSTPSLY 60
           MEDVLTEIPPPSRFFQEDL                    KPDQPLCPSLLIIALSTPSLY
Sbjct: 1   MEDVLTEIPPPSRFFQEDLNNFASPLPPLPSPFLLFSNPKPDQPLCPSLLIIALSTPSLY 60

Query: 61  VFHHVSSKTLIGSVFIPEIPFSGNSIDPSLRDKSCNIYALNDADKLTLLVSIQCSVSAER 120
           VF+HVSSKTLIGSVF+PEIPFSGN+I+PSLRDKSCNIYALNDADK TLL S+QCSVSAER
Sbjct: 61  VFNHVSSKTLIGSVFLPEIPFSGNTIEPSLRDKSCNIYALNDADKSTLLASVQCSVSAER 120

Query: 121 SNVVAKLLIGEQIIPERVLILDSIKIQNFRGKLSSDEACAFKLETSTERKGHTNGCGGSS 180
           SN VAKLLIG QIIPERVLILDSI+ QNFRGKLS DE  AFKLET  ERKG  +GCGGSS
Sbjct: 121 SNAVAKLLIGGQIIPERVLILDSIQSQNFRGKLSPDETHAFKLETLAERKGQVDGCGGSS 180

Query: 181 LLKGLDYLPSGSMVDGLAAALLARCQMRNMKGTLCVSWPEHDGSAVALIKSVLQKNVLHR 240
            LKGL+Y PSGSMVDGL+AALLA+CQMRN++GTLCVSWPE+ GS +AL+KS+LQKNVLH 
Sbjct: 181 FLKGLEYFPSGSMVDGLSAALLAQCQMRNIRGTLCVSWPEYGGSVIALVKSILQKNVLHD 240

Query: 241 INLSSNGNAEDKYLWSSRIKDSSFDSELYT 270
            ++SS G AEDK L  SRIKD   DSELYT
Sbjct: 241 FDMSS-GEAEDKSLRFSRIKDHPCDSELYT 269