Jatropha Genome Database

JcCB0037361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0037361.10 - phase: 0 /partial
         (240 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28281.m000367 conserved hypothetical protein                          344   2e-95
30008.m000811 conserved hypothetical protein                           53   1e-07

>28281.m000367 conserved hypothetical protein
          Length = 375

 Score =  344 bits (883), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 174/242 (71%), Positives = 196/242 (80%), Gaps = 2/242 (0%)

Query: 1   MGKAKSFRSKAVHFVSDLTTVFLNPISD--XXXXXXXXXXXVTEDLSESKRSQLQSITEE 58
           MGKAKSF+SKAVHFVSDLTTVFLNPISD              TEDL+ES ++Q +SI+EE
Sbjct: 1   MGKAKSFKSKAVHFVSDLTTVFLNPISDKPSSKPPPHAHHPPTEDLNESIKNQHESISEE 60

Query: 59  DTGDLADGPDTSSFTAFXXXXXXXXXXGVNSNADEKNDSVAEIVDQPSDSTRKESSTKKS 118
           DTGDL DGPDTSSFTAF          G NSNADEKND++AE+V+Q SD+ RKES T+K 
Sbjct: 61  DTGDLVDGPDTSSFTAFLYSLLSSSESGDNSNADEKNDNIAEMVNQLSDNVRKESGTRKG 120

Query: 119 LLSRGKQSLRAIYQAARIGGYRGQEQKFESDMKYTDESDDNFDGLEMKHMQNVEQAVEAR 178
           LLSRGKQSL+AIY A RIGGYRGQE+K  SDM   DESDDNF GLEMK+MQ V++ VE  
Sbjct: 121 LLSRGKQSLKAIYHATRIGGYRGQERKGNSDMIIADESDDNFYGLEMKNMQPVKEPVELG 180

Query: 179 ELPDVSEPSLLLSEKARNALYASLPALVQGRKWLLLYSTWRHGISLATLYRRSMLWPGLS 238
           +LPD+SEPSLLLSEKAR+ LYASLPALV GRKWL+LYSTWRHGISL+TLYRRSMLWPGLS
Sbjct: 181 DLPDMSEPSLLLSEKARSVLYASLPALVHGRKWLMLYSTWRHGISLSTLYRRSMLWPGLS 240

Query: 239 LL 240
           LL
Sbjct: 241 LL 242


>30008.m000811 conserved hypothetical protein
          Length = 339

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 56/103 (54%), Gaps = 7/103 (6%)

Query: 141 GQEQKFESDMKYTDESDD-NFDGLEMKHMQNVEQAVEARE--LPDVSEPSLLLSEKARNA 197
           G+E    S  K TD+ +D N +G   +   + +   EARE   P  S P L+  E     
Sbjct: 113 GKESSKISVNKGTDKINDINENGESGRSSSDSDIFEEAREQQTPRSSLPDLMXXE----F 168

Query: 198 LYASLPALVQGRKWLLLYSTWRHGISLATLYRRSMLWPGLSLL 240
           L +SLP +V+G +W LLYST +HGISL TL R+S    G  LL
Sbjct: 169 LQSSLPNIVKGCQWALLYSTLKHGISLRTLIRKSSELSGPCLL 211