Jatropha Genome Database

JcCB0036891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0036891.10 - phase: 1 /pseudo/partial
         (367 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29776.m000488 isoamylase, putative                                    590   e-169
29908.m006089 isoamylase, putative                                    233   1e-61
28153.m000287 isoamylase, putative                                    146   1e-35
45776.m000014 conserved hypothetical protein                           67   2e-11
28323.m000041 alpha-amylase, putative                                  54   2e-07

>29776.m000488 isoamylase, putative
          Length = 795

 Score =  590 bits (1520), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 282/331 (85%), Positives = 307/331 (92%), Gaps = 7/331 (2%)

Query: 30  LIQASRRDSGGGAEVETMVVVDQPKLRRRYQVSEGHPAPFGATASDDGVNFSVYSTNAVS 89
           + +A+RRD     EVET VVVD+PK RR YQVSEGHPAPFGAT +D GVNF++YS++AVS
Sbjct: 56  VTKAARRD-----EVETAVVVDKPKFRR-YQVSEGHPAPFGATIADGGVNFAIYSSDAVS 109

Query: 90  ASLCLISLDDLPKNKVTEEIPLDPLTNKTGDIWHVFLKGDFKDMLYGYRFDGKLSPEEGH 149
           ASLCLISLDDL +N+V+EEI LDP+ N+TGDIWHVFLKGDFKD LYGYRFDG LSP +GH
Sbjct: 110 ASLCLISLDDLTQNRVSEEIALDPVRNRTGDIWHVFLKGDFKDTLYGYRFDGVLSPHDGH 169

Query: 150 YFESSEIVLDPYAKAVISRGEFGVLGPDDNCWPQMAGMIPAA-RDKFDWEGDLPLKYPQK 208
           YF+SS+IVLDPYAKAVISRGEFGVLGP DNCWPQMAGMIP+A + +FDWEGDLPLKYPQK
Sbjct: 170 YFDSSQIVLDPYAKAVISRGEFGVLGPGDNCWPQMAGMIPSASQAEFDWEGDLPLKYPQK 229

Query: 209 DLMIYEMHVRGFTQHESSRTEFPGTYLGVVEKLDHLKELGVNCIELMPCHEFNELEYYSY 268
           DL+IYEMHVRGFT+HESSRTEFPGT+L  VEKLDHLKELGVNCIELMPCHEFNELEYYSY
Sbjct: 230 DLVIYEMHVRGFTRHESSRTEFPGTFLATVEKLDHLKELGVNCIELMPCHEFNELEYYSY 289

Query: 269 NSVLGDYKMNFWGYSTVNYFSPMTRYSSAGTRNCGHDAINEFKLLVREAHKRGIEVIMDV 328
           NSVLGDYKMNFWGYST+NYFSPMTRYSSAGTRNCG DAINEFK LVREAHKRGIEVIMDV
Sbjct: 290 NSVLGDYKMNFWGYSTINYFSPMTRYSSAGTRNCGRDAINEFKFLVREAHKRGIEVIMDV 349

Query: 329 VFNHTAEGNEKGPILSFRGVDNSVYYMLAPK 359
           VFNHTAEGN+KGPILSFRGVDNSVYYMLAPK
Sbjct: 350 VFNHTAEGNQKGPILSFRGVDNSVYYMLAPK 380


>29908.m006089 isoamylase, putative
          Length = 783

 Score =  233 bits (593), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 134/320 (41%), Positives = 193/320 (60%), Gaps = 22/320 (6%)

Query: 49  VVDQPKLRRRYQVSEGHPAPFGATASDDGVNFSVYSTNAVSASLCLISLDDLPKNKVTE- 107
           V    ++   + +  G   P G +  D+G+NF+++S +A S +LCL+    LP+   ++ 
Sbjct: 89  VSQMSEMTPSFNLYPGQAFPLGVSEVDNGINFALFSQHATSVTLCLL----LPQRGGSDS 144

Query: 108 ------EIPLDPLTNKTGDIWHVFLKG-DFKDMLYGYRFDGKLSPEEGHYFESSEIVLDP 160
                 E+ LDP  NKTGDIWH+ ++      +LYGYR DG  + ++GH F+ S ++LDP
Sbjct: 145 TDGGMIELDLDPRMNKTGDIWHICVEDLPRSSVLYGYRVDGPHNWDQGHRFDRSIVLLDP 204

Query: 161 YAKAVISRGEFGVLGPDDNCWPQMAGMIPAARDKFDWEGDLPL-KYPQKDLMIYEMHVRG 219
           YAK +  R  FG      +   +  G        FDW  +  L   P+KDL+IYEM++R 
Sbjct: 205 YAKLIEGRRYFG---DATHKLSKFLGTYDFDSLPFDWGENYKLPNIPEKDLVIYEMNIRA 261

Query: 220 FTQHESSRTE--FPGTYLGVVEKLDHLKELGVNCIELMPCHEFNELEYYSYNSVLGDYKM 277
           FT  +SS  E    G+YLGV+EK+ HL ELGVN +EL+P  EF+E E     +   D+ +
Sbjct: 262 FTADKSSGLEPKIRGSYLGVIEKIPHLLELGVNAVELLPVFEFDEFELQRRPNPR-DHMI 320

Query: 278 NFWGYSTVNYFSPMTRYSSAGTRNCGHDAINEFKLLVREAHKRGIEVIMDVVFNHTAEGN 337
           N WGYST+N+F+PM+RY+S G   C  +A  EFK +V+  H  GIEVI+DVV+NHT E +
Sbjct: 321 NTWGYSTINFFAPMSRYASGGGGPC--NASREFKEMVKALHGAGIEVILDVVYNHTNEAD 378

Query: 338 EKGP-ILSFRGVDNSVYYML 356
           +K P   SFRG+DN +YYML
Sbjct: 379 DKNPYTTSFRGIDNMIYYML 398


>28153.m000287 isoamylase, putative
          Length = 872

 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 149/298 (50%), Gaps = 38/298 (12%)

Query: 62  SEGHPAPFGATASDDG-VNFSVYSTNAVSASLCLISLDDLPKNKVTEEIPLDPLTNKTGD 120
           + G P+P G + S DG +NF+ +S N     LCL   DD   +K   E+ LDP  N+TGD
Sbjct: 219 NSGDPSPLGLSFSTDGSMNFAFFSRNVEGLVLCL--YDDSTTDKPALELDLDPYVNRTGD 276

Query: 121 IWHVFLKGDFKDMLYGYRFDGKLSPEEGHYFESSEIVLDPYAKAVISRGEFGVLGPDDNC 180
           +WH  L+G +    YGYR  G +        +   ++LDPYA+ + S     +       
Sbjct: 277 VWHASLEGAWTFTSYGYRCKGAILQGNTSKVDMECVLLDPYARVIAS----SMTDHGSRL 332

Query: 181 WPQMAGMIPAARDKFDWEGDLPLKYPQKDLMIYEMHVRGFTQHESSR--TEFPGTYLGVV 238
             +  G +      F+W  D+      + L++Y ++V+ FT+H+S +  ++  GT+ G++
Sbjct: 333 SAKYLGRL-CEEPAFEWGSDIRPNLAMEKLIVYRLNVKRFTEHKSGKLYSDIAGTFAGLI 391

Query: 239 EKLDHLKELGVNCIELMPCHEFNELE--YYSYNSVLGDYKMNFWGYSTVNYFSPMTRYSS 296
           EK+DH + LGVN + L P   F+E +  Y+ Y                 ++FSP   Y  
Sbjct: 392 EKMDHFRNLGVNAVLLEPIFPFDEQKGPYFPY-----------------HFFSPSNIYGP 434

Query: 297 AGTRNCGHDAINEFKLLVREAHKRGIEVIMDVVFNHTAEGNEKGPILSFRGVDNSVYY 354
           +G       AI   K +V+E H   IEV+++VVF HTAEG       + +G+D+  YY
Sbjct: 435 SGG---SISAITSMKEMVKELHANRIEVLLEVVFTHTAEGG------ALQGIDDFSYY 483


>45776.m000014 conserved hypothetical protein
          Length = 154

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 8/108 (7%)

Query: 64  GHPAPFGATASDDGVNFSVYSTNAVSASLCLISLDDLPKNKVTEEIPLDPLTNKTGDIWH 123
           G P P G++    GVNF+V+S NA    LCL      P  +  +E+    L   T ++WH
Sbjct: 35  GAPYPLGSSWDGLGVNFAVFSANAQRIELCLFE----PTGR--KELKRYALPECTDEVWH 88

Query: 124 VFLKGDFKDMLYGYRFDGKLSPEEGHYFESSEIVLDPYAKAVISRGEF 171
            +L       +Y +R  G   P+ GH F   +++LDPYA+ +I  G+F
Sbjct: 89  GYLPHAHPGTVYAFRAHGPYQPQHGHRFNPHKLLLDPYARKLI--GQF 134


>28323.m000041 alpha-amylase, putative
          Length = 221

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 27/123 (21%)

Query: 212 IYEMHVRGFTQHESSRTEFPGTYLGVVEKLDHLKELGVNCIELMPCHEFNELEYYSYNSV 271
           +YE++ R F++         GT   V   L  L+++GV+ + LMP H   +    +    
Sbjct: 32  VYEVNTRQFSKE--------GTLNAVAASLPRLRQMGVDIVWLMPIHPIGQ---KNRKGT 80

Query: 272 LGDYKMNFWGYSTVNYFSPMTRYSSAGTRNCGHDAINEFKLLVREAHKRGIEVIMDVVFN 331
           LG Y      Y+  +Y +    + +          +++ + LVR+AH  G+ VI+D V N
Sbjct: 81  LGSY------YAVADYTAVNPEFGT----------VDDMRKLVRQAHALGMHVILDWVGN 124

Query: 332 HTA 334
           HTA
Sbjct: 125 HTA 127