Jatropha Genome Database

JcCB0035061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0035061.10 - phase: 0 /pseudo
         (220 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30148.m001414 conserved hypothetical protein                          308   1e-84

>30148.m001414 conserved hypothetical protein
          Length = 305

 Score =  308 bits (789), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 147/187 (78%), Positives = 160/187 (85%), Gaps = 1/187 (0%)

Query: 3   MALALSYFHFRTHCSFSSAFSSPTIRPAVILPGLGNNTADYQKLEVTLKEYGVPTVVAKV 62
           +ALA S FHF+THCS +++ S+ T+RPA+ILPGLGNNT DYQKLEVTL EY VPTVVAKV
Sbjct: 4   VALAFSPFHFKTHCSSNNSIST-TVRPAIILPGLGNNTGDYQKLEVTLNEYRVPTVVAKV 62

Query: 63  SRFDWFRNAAGLVDPNYWRGTLQPRPVLDWYMKRIQEAVNEAKELAQGGTLSLIGHSAGG 122
           SRFDWFRNAAGLVDPNYWRGTLQPRPVLDWY+KR+ EAV EAKELAQGG+LSLIGHSAGG
Sbjct: 63  SRFDWFRNAAGLVDPNYWRGTLQPRPVLDWYLKRVDEAVREAKELAQGGSLSLIGHSAGG 122

Query: 123 WLARVYMEEFGLSDISXXXXXXXXXXXXXKGVPGVIDQTRGLLYYVEEHCAKAVYNPQLK 182
           WLARVYMEEFG SDIS             KGVPGVIDQTRGLLYYVE+HC +AVY P LK
Sbjct: 123 WLARVYMEEFGPSDISLLLTLGTPHLPPPKGVPGVIDQTRGLLYYVEKHCKEAVYTPDLK 182

Query: 183 YVCIAGR 189
           YVCIAGR
Sbjct: 183 YVCIAGR 189