Jatropha Genome Database

JcCB0034671.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0034671.20 + phase: 0 /partial
         (113 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29970.m000990 chromatin binding protein, putative                      94   1e-20

>29970.m000990 chromatin binding protein, putative
          Length = 318

 Score = 94.0 bits (232), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 51/90 (56%), Gaps = 39/90 (43%)

Query: 15  ETSSGDAPPSNSGVFSEGERVLAYHGPRIYEAKALFSLCAYLEFLSALIQLITKLNWTCS 74
           ETSSGDAPPSNSG+FSEGERVLAYHGPRIYEAK                           
Sbjct: 14  ETSSGDAPPSNSGIFSEGERVLAYHGPRIYEAK--------------------------- 46

Query: 75  LPTASINLKFTVVQKAELRKKEWRYFVHYL 104
                       VQKAELRKKEWRYFVHYL
Sbjct: 47  ------------VQKAELRKKEWRYFVHYL 64