Jatropha Genome Database

JcCB0034671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0034671.10 + phase: 0 
         (86 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29970.m000991 conserved hypothetical protein                           98   1e-21
29801.m003091 conserved hypothetical protein                           45   8e-06

>29970.m000991 conserved hypothetical protein
          Length = 85

 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/67 (77%), Positives = 56/67 (83%), Gaps = 2/67 (2%)

Query: 21 GSKTQARPLNTLESHG-PRVRDKGFFDGLFLGAIKQSGPSPGQGNRLTDSRSFGGINKDG 79
          GS T+ARPLN LE H  PR+ DKGFFDGL +GAIKQSGPSPG GN+ TDSR FGGI KDG
Sbjct: 20 GSTTEARPLNILEPHHRPRMMDKGFFDGLSIGAIKQSGPSPGAGNKYTDSRGFGGI-KDG 78

Query: 80 PSPGQGH 86
          PSPGQGH
Sbjct: 79 PSPGQGH 85


>29801.m003091 conserved hypothetical protein
          Length = 100

 Score = 45.1 bits (105), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 34/63 (53%)

Query: 24 TQARPLNTLESHGPRVRDKGFFDGLFLGAIKQSGPSPGQGNRLTDSRSFGGINKDGPSPG 83
          T AR L+           +G   GL L  +K+SGPSPG G++  + ++ G I   GPSPG
Sbjct: 30 TDARRLSAKLHEDVFQEIEGVIKGLSLEEVKKSGPSPGIGHKYKNLQTLGVIKNSGPSPG 89

Query: 84 QGH 86
           GH
Sbjct: 90 GGH 92