Jatropha Genome Database

JcCB0034461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0034461.10 - phase: 0 
         (186 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008726 conserved hypothetical protein                          137   4e-33

>30128.m008726 conserved hypothetical protein
          Length = 183

 Score =  137 bits (344), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/192 (49%), Positives = 113/192 (58%), Gaps = 18/192 (9%)

Query: 1   MDQREDQFQTKGICSRLYNFMTKTLAIYALKSVKLGHPLHKNFARARTRPPCNSDLMVQP 60
           +DQR+D  QT GIC+RLYNF+ K L ++A KSV LG PL+++ A   T+    +D M   
Sbjct: 2   VDQRKDHLQTLGICNRLYNFIKKLLLMHAYKSVILGDPLYRDSAETETKAANENDHMAHS 61

Query: 61  VTQEETPFEGVE-QTLNIKNSDPFFPNSSSINGLKQEGKELQEVQENNSNF-----NGEK 114
             QEE   E  E Q  N+ NSDP            Q   EL   Q+NN N        E 
Sbjct: 62  KPQEEKLSEVAEDQAHNMNNSDPSV----------QLSDELTAFQDNNDNVIEPGKEPEA 111

Query: 115 IEAKVPKKVVSINDRVEEIDTXXXXXXXXXXXENLTSFEQEEEEPKPLKSILKVGSFSGE 174
           +EAK PKK VSI+DRVEEIDT           ENL   E+EEEEPKPL+SILKVGS+SGE
Sbjct: 112 VEAKPPKKSVSISDRVEEIDT-RKKIRRKKSKENLILVEEEEEEPKPLRSILKVGSYSGE 170

Query: 175 -KSNSFVNRTSD 185
            KSNSFVN T D
Sbjct: 171 NKSNSFVNPTID 182