Jatropha Genome Database

JcCB0033901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0033901.10 - phase: 0 /pseudo/partial
         (70 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29709.m001212 nucleolar GTP-binding protein, putative                  72   4e-14

>29709.m001212 nucleolar GTP-binding protein, putative
          Length = 443

 Score = 72.4 bits (176), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/67 (58%), Positives = 43/67 (64%), Gaps = 15/67 (22%)

Query: 2   QTVTYEVVNASYVPTPQAKQQQNETM---------------LPMVMPSVDIFYSALRKAK 46
           QT+TYE+VNASYVP  Q K  ++ T                LPMVMPSVDI YSALRKAK
Sbjct: 49  QTITYEIVNASYVPIHQTKPTRSYTTDKSPGNLQNLGAFQKLPMVMPSVDILYSALRKAK 108

Query: 47  RVPPTKG 53
           RV PTKG
Sbjct: 109 RVSPTKG 115