Jatropha Genome Database

JcCB0032921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0032921.10 - phase: 0 /pseudo/partial
         (296 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

50815.m000012 hypothetical protein                                    144   7e-35
29844.m003160 N-carbamoyl-L-amino acid hydrolase, putative             76   2e-14
27942.m000154 conserved hypothetical protein                           60   1e-09

>50815.m000012 hypothetical protein
          Length = 73

 Score =  144 bits (362), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 66/72 (91%), Positives = 69/72 (95%)

Query: 224 MEAASKELNLTHKLMISRAYHDSLFMARISPMGMLFIPCYRGYSHKPEEYASIEDIANGV 283
           ME ASKELNLTHKLMISRAYHDSLFMARISPMGMLFIPCY+GYSHKPEEYAS +DI NGV
Sbjct: 1   MEVASKELNLTHKLMISRAYHDSLFMARISPMGMLFIPCYKGYSHKPEEYASSQDIGNGV 60

Query: 284 KVLALTLSKLSL 295
           KVLALTL+KLSL
Sbjct: 61  KVLALTLAKLSL 72


>29844.m003160 N-carbamoyl-L-amino acid hydrolase, putative
          Length = 349

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/38 (94%), Positives = 37/38 (97%)

Query: 133 VEKHVLESGSIDTVGTVGILDLHPGAINSIPSKSHLEI 170
           VEKHVLES SIDTVGTVGIL+LHPGAINSIPSKSHLEI
Sbjct: 305 VEKHVLESSSIDTVGTVGILELHPGAINSIPSKSHLEI 342


>27942.m000154 conserved hypothetical protein
          Length = 436

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 8/149 (5%)

Query: 148 TVGILDLHPGAINSIPSKSHLEIDTRDIDEERRNGVIEKIKQSAITIAKNRGV-----KL 202
           TVG +   P A N IP +    +D R +D+  R+ V+ ++      I   R V     + 
Sbjct: 283 TVGEISTWPSASNVIPGQVTFTVDLRAMDDMGRDAVLYELSNRIYQICDRRSVSCIIERK 342

Query: 203 SEFNIINQDPPALSDKSVIE--AMEAASKELNLTHKLMISRAYHDSLFMARISPMGMLFI 260
            +   ++ DP   S   +    A++  + E+      ++S A HD++ M+ ++ +GMLF+
Sbjct: 343 HDAQAVSCDPELSSQLKLAANAALKRMTGEIQDDIPTLMSGAGHDAMAMSHLTKVGMLFV 402

Query: 261 PCYRGYSHKPEEYASIEDI-ANGVKVLAL 288
            C  G SH P E+   +DI A G+ ++A 
Sbjct: 403 RCRGGISHSPAEHVMDDDIWAAGLAIVAF 431