Jatropha Genome Database

JcCB0032671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0032671.10 + phase: 0 
         (349 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29657.m000467 U1 small nuclear ribonucleoprotein 70 kD, putative      441   e-124
29634.m002163 U1 small nuclear ribonucleoprotein 70 kDa, putative      96   3e-20
30169.m006336 peptidyl-prolyl cis-trans isomerase, putative            60   1e-09
29878.m000232 RNA binding protein, putative                            58   8e-09
29633.m000882 glycine-rich RNA-binding protein, putative               54   8e-08
30138.m003973 glycine-rich RNA-binding protein, putative               54   1e-07
30055.m001598 Cold-inducible RNA-binding protein, putative             52   3e-07
30032.m000469 RNA binding protein, putative                            52   5e-07
29999.m000207 RNA binding protein, putative                            52   5e-07
30008.m000803 ribonucleoprotein, chloroplast, putative                 52   5e-07
29930.m000611 RNA binding protein, putative                            51   7e-07
30223.m000145 conserved hypothetical protein                           50   1e-06
29923.m000811 RNA-binding region-containing protein, putative          50   1e-06
29154.m000213 cold-inducible RNA binding protein, putative             50   1e-06
30094.m000674 dc50, putative                                           50   2e-06
28976.m000161 RNA binding protein, putative                            50   2e-06
29428.m000321 poly-A binding protein, putative                         49   5e-06

>29657.m000467 U1 small nuclear ribonucleoprotein 70 kD, putative
          Length = 389

 Score =  441 bits (1134), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/361 (63%), Positives = 259/361 (71%), Gaps = 36/361 (9%)

Query: 1   MSRANVNSVFYADTYHPIQAGSIDGTDIVPHDNAVYRALLCSSAGLYDPFGDPKVIGDPY 60
           M    VNSVFYA +YHPIQAGSIDGTDI+PHDNA+YRA LC SAGLYDP GDPKVIGDP+
Sbjct: 1   MRETKVNSVFYAKSYHPIQAGSIDGTDILPHDNAIYRAFLCFSAGLYDPLGDPKVIGDPF 60

Query: 61  CTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYK 120
           CT+FVGRLSH TTE +L KAMSKYG+V+NLRLVRDIVTGASRGYAFVEY TEREMRR+Y 
Sbjct: 61  CTLFVGRLSHSTTENTLLKAMSKYGKVRNLRLVRDIVTGASRGYAFVEYGTEREMRRAYM 120

Query: 121 DAHHSYIDDSEIMVDYNRQQLMPGWIPXXXXXXXXXXKESGQLRFGGRERPFRAPLQSIP 180
           DAHHS+IDDSEI+VDYNRQQLMPGWIP          KESGQLRFGGRERPFRAPLQS+P
Sbjct: 121 DAHHSFIDDSEIIVDYNRQQLMPGWIPRRLGGGLGGRKESGQLRFGGRERPFRAPLQSVP 180

Query: 181 LDDLKRLGIPPPPEGRYMSCFQVPSPPRRNRSSIDREE-SSRMRSSIDKXXXXXXXXXXX 239
            D+LKRLGI PPPEGRYMS F VPSPPRRN+SSIDREE SS  RSSIDK           
Sbjct: 181 FDELKRLGISPPPEGRYMSRFGVPSPPRRNQSSIDREEGSSHRRSSIDKEESRHRSRSAE 240

Query: 240 XXXXY------------------------NKRSSRGKEEHTSKQRSKEREERYHKGRSLD 275
               Y                        +KRSSRGKEEH+ K  S+E+E R+ KG S+D
Sbjct: 241 REERYRNRSPRLKEEHSHRSSSVEREERHSKRSSRGKEEHSGKWHSEEKEGRHRKGNSVD 300

Query: 276 SSG-----------HSHKKISLEKEKHHEKSSPLDREETPYKRSSDLEAYPHTSSKDRKE 324
            SG           H + K SL++EKH EK +  D EETP +  S++E Y + SS+DRKE
Sbjct: 301 RSGRSRENLLEREDHHYAKGSLDREKHKEKRNLGDMEETPQELFSEVEEYSNRSSRDRKE 360

Query: 325 G 325
            
Sbjct: 361 A 361


>29634.m002163 U1 small nuclear ribonucleoprotein 70 kDa, putative
          Length = 506

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 61/101 (60%)

Query: 47  YDPFGDPKVIGDPYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAF 106
           YDP  DP + GDPY T+FV RL++ TTE  +++    YG +K +RL+ D      RGYAF
Sbjct: 124 YDPNSDPNISGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKAANKPRGYAF 183

Query: 107 VEYETEREMRRSYKDAHHSYIDDSEIMVDYNRQQLMPGWIP 147
           +EY   R+M+ +YK A    +D   ++VD  R + +P W P
Sbjct: 184 IEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 224


>30169.m006336 peptidyl-prolyl cis-trans isomerase, putative
          Length = 587

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 42  SSAGLYDPFGD-PKV-IGDPYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTG 99
           SSA + +  GD P   +  P   +FV +L+  T +E L    S++G V +  ++RD  TG
Sbjct: 233 SSAVVLESIGDIPDAEMKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVISAEIIRDFKTG 292

Query: 100 ASRGYAFVEYETEREMRRSYKDAHHSYIDDSEIMVDYNRQQLMPGW 145
            S  YAF+E+ET+    ++Y    ++ IDD  I VD++ Q +   W
Sbjct: 293 DSLCYAFIEFETKESCEQAYFKMDNALIDDRRIHVDFS-QSVAKQW 337


>29878.m000232 RNA binding protein, putative
          Length = 354

 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%)

Query: 58  DPYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRR 117
           +P   +FV  LS  TT E L++A SK+G V   R+V D V+G S+G+ FV Y +  +  +
Sbjct: 49  EPNTNLFVSGLSKRTTTEGLKQAFSKFGEVVQARVVTDRVSGYSKGFGFVRYGSLEDAEK 108

Query: 118 SYKDAHHSYIDDSEIMVDYNR 138
             +     ++D   I  +Y R
Sbjct: 109 GIEGMDGKFLDGWVIFAEYAR 129


>29633.m000882 glycine-rich RNA-binding protein, putative
          Length = 166

 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%)

Query: 64  FVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDAH 123
           FVG L+  T++++L +A S YG V   +++ D  TG SRG+ FV +  E+ MR + +  +
Sbjct: 11  FVGGLAWATSDKALEEAFSAYGEVLESKIINDRETGRSRGFGFVTFNNEKSMRDAIEGMN 70

Query: 124 HSYIDDSEIMVD 135
              +D   I V+
Sbjct: 71  GQNLDGRNITVN 82


>30138.m003973 glycine-rich RNA-binding protein, putative
          Length = 267

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 34/52 (65%)

Query: 63  VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETERE 114
           VFVG +S+ T + SLR+A  KYG V   R++ D  TG SRG+AFV Y +  E
Sbjct: 42  VFVGGISYQTDDTSLREAFGKYGEVIEARVIIDRETGRSRGFAFVTYTSSEE 93


>30055.m001598 Cold-inducible RNA-binding protein, putative
          Length = 121

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 42/73 (57%)

Query: 63  VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
           +FV  +S  +T ESL +A SK+G +  + +++D      +GYA+V + TE E +++  + 
Sbjct: 36  LFVKGISFSSTTESLTEAFSKFGEIVEVNIIKDKAMDRPKGYAYVTFATENEAKKALTEM 95

Query: 123 HHSYIDDSEIMVD 135
           +   ID   + VD
Sbjct: 96  NGKVIDGRPVFVD 108


>30032.m000469 RNA binding protein, putative
          Length = 127

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 63  VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
           +FVG LS  TT++ L +A S+YG+V    +V D V   S+G+ FV + +E E   +  + 
Sbjct: 33  LFVGGLSFYTTDKGLTEAFSQYGQVVEATIVSDRVLDRSKGFGFVTFASEDEAHNALSEM 92

Query: 123 HHSYIDDSEIMVDYNR 138
           +   ++   I VDY +
Sbjct: 93  NGKTLNGRVIYVDYAK 108


>29999.m000207 RNA binding protein, putative
          Length = 144

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 44/73 (60%)

Query: 63  VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
           +FV  LS  TT+E L++A S +G++ + +++ D  +G S+G+ F+ Y T  E  ++ +  
Sbjct: 38  LFVSGLSRLTTDEKLKEAFSPFGQLVDAKVIIDRASGRSKGFGFITYATIEEAEKAREGM 97

Query: 123 HHSYIDDSEIMVD 135
           +  ++D   I VD
Sbjct: 98  NAKFLDGWVIFVD 110


>30008.m000803 ribonucleoprotein, chloroplast, putative
          Length = 285

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 33/56 (58%)

Query: 63  VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRS 118
           +FVG LS   T ESL +A  +YG +   R++ D  TG SRGY FV Y T  EM  +
Sbjct: 206 LFVGNLSWSVTSESLVEAFQEYGNIVGARVLYDGETGRSRGYGFVCYATRSEMENA 261


>29930.m000611 RNA binding protein, putative
          Length = 371

 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 41/68 (60%)

Query: 68  LSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDAHHSYI 127
           LS  T+E++LR A   +G +  ++++ D ++  S+GYAF+EY TE     + K+ +   I
Sbjct: 286 LSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAANAALKEMNGKII 345

Query: 128 DDSEIMVD 135
           +   I+VD
Sbjct: 346 NGWMIVVD 353


>30223.m000145 conserved hypothetical protein
          Length = 66

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query: 67  RLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDAH 123
           R+S  TTEESLR A   +G++  + LV D +    RG+AF+ Y TE E +++ +  H
Sbjct: 6   RISFRTTEESLRNAFQNFGKLVEVNLVMDKIANRPRGFAFLRYATEEESQKAIEGMH 62


>29923.m000811 RNA-binding region-containing protein, putative
          Length = 256

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 5/74 (6%)

Query: 49  PFGDPKVIGDPYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVE 108
           PFGD  +       VFVG L+  T +E++R+   KYG +    ++ D +TG S+GY FV 
Sbjct: 9   PFGDTTL-----TKVFVGGLAWETPKEAMREHFEKYGEILEAVIISDKLTGRSKGYGFVT 63

Query: 109 YETEREMRRSYKDA 122
           ++     +++ +DA
Sbjct: 64  FKEPEAAKKACEDA 77


>29154.m000213 cold-inducible RNA binding protein, putative
          Length = 94

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 42/73 (57%)

Query: 63  VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
           +FVGRLS  TT + L K  S +G VK  RLV D  T   +G+ FV +++E + +++ K  
Sbjct: 9   LFVGRLSCYTTNQKLEKLFSPFGIVKEARLVLDPRTQKPKGFGFVTFDSESQAQKALKAM 68

Query: 123 HHSYIDDSEIMVD 135
           +   +D   + V+
Sbjct: 69  NGRIVDGRLLFVE 81


>30094.m000674 dc50, putative
          Length = 210

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 42/73 (57%)

Query: 63  VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
            F+G LS  T++  L++A  K+G +   ++V D  +G SRG+ FV ++ ++ M  + ++ 
Sbjct: 9   CFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIEEM 68

Query: 123 HHSYIDDSEIMVD 135
           +   +D   I VD
Sbjct: 69  NGMDLDGRTITVD 81


>28976.m000161 RNA binding protein, putative
          Length = 284

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 63  VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
           +FVG L+  T  + L    SKYG+VK   +V D  TG+SRG+ FV +E       +++D 
Sbjct: 8   LFVGGLNSKTDGDYLNLHFSKYGQVKETLIVMDKETGSSRGFGFVTFEDHSAADTAFRDQ 67

Query: 123 H 123
           H
Sbjct: 68  H 68


>29428.m000321 poly-A binding protein, putative
          Length = 216

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 62  TVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKD 121
            +++GR+ H   E+ ++   S++G +K LR+ R+  TG S+ Y F+E+E + E+     D
Sbjct: 56  VLYIGRIPHGFYEKEMQAYFSQFGTIKKLRIARNKKTGKSKHYGFIEFE-DPEVAEVVAD 114

Query: 122 AHHSYIDDSEIMVDY 136
             H+Y+    ++  Y
Sbjct: 115 CMHNYLLFEHLLQVY 129